Pseudomonas sp. P179, HMPREF1224_05689

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. P179 genomic scaffold acBRO-supercont1.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTTCTCAGCGCCCACCATCGCGCCATGCATGCGCTGTACAGCGAGCACCATGGCTGGTTGCAGAACTGGCTGCGCGGCAAGCTGGGCTGCGCGGCGGACG CGGCGGACCTGGCCCAGGACACCTTCCTGCGCATCCTGCTCAAGCGCGAACTGCGCGAGATCGGCATGCCGCGCGCGTTCCTGCGGACCATCGCCCGCGG CCTGGTGATCGACCACTGGCGTCGCGAGGAACTGCAGCGCGCCTACCTCGAAAGCATCGCCCACCTGCCCGAGGCACAGGCGCCGTCGCCCGAGGCGCGG GAACTGGTGCTGGAACTGCTGGAGGAAATCTCGCGGATGCTCGACGGGCTCAAGCCGAAGGTCCGCACCGCCTTCCTCCTGGCCCAGTGCGAAGACCTCA GCCACCGGCAGATCGCCGAACGCATGGGGGTTTCCCAGCGTAGCGTCGAGCGCTACGTGGCCGAGGCGCTGTACCACTGCTACCTGCTGCGCTACGGCGA
DNA Sequence for Gene
>HMPREF1224_05689
ATGAGCGGAGCCGTGGACGGGACGCGCGGTAGGGTCGACGAAGCGGTGGTCAGGCAGGCCATCCACTGGCTGGTCCGCCTGCGCTCGCAGCCGGCCGACG ATCGCCTGCAGCGCGCCTGCGCGGCCTGGCGCGCGGAGCACGGCGAGCACGAGCGGGCCTGGCAGCAGGTCAGCGCGCTCAACGAAGAACTGCAAGGACG CTTCAAGGCGCTGCCCGGCGGGGTCGCCTACGGCACCCTGGACAGTAGCGCGCAGCGCCTGCAGCGGCGCCAGGCGCTGAAACTGCTGTCGCTGCTGGTG GCCGGCGGCGCCGTGGCCTGGGTCGGTCGCGATAGCCTGCCCTGGCAGCGCCTGAGCGCCGACTACAGCACCGCCACCGGCGAGCGGCGCAGTATCGAGC TGGTCGACGGCACCCGCCTGCAACTGAACACCGACAGCGCGGTCGACGTGCGCTACGACGCCGGCCAGCGCCTGATTCTCCTCGCCCGCGGCGAGATCTT CCTCGCCAGCGGCGCCGATACGCAATCGCCCACGCACAGGCCGCTGCGGGTACGTACCGCGCAAGGGCTGTTCGAGGCCCTCGGCACCCGTTTCAACGTA CGCCTGCAAGATGCCGCCACCTGTCTCAGCGTCAGCGAGGGTTCGGTGCGCATCGATGCCTTCGGCGCGCGTCCGCTGCAGGCTCCGGTGGCCGAGGCGG GGCAGAGCTATCGGATCGCCGCCGACGGCGTGCGGCGCCTCGAACGGCCGCAGATGGACGCCGTGGCCTGGGCCGATGGCCTCATCGTCACCCGCGACAT GCGCCTGGCCGATTTCCTCGCCGAGGTCGCCCGCTACCGCAACGGCTACCTCGGCTGCGCCGCGGAGGTCGCCGACCTGCGCCTGTCCGGGGTCTATCGC CTGGACGACACCGACAAGCTGCTGCAGGTGCTCGCGCGGACCCTGCCGGTGCGCCTGCAGCGACATACCCGCTGGTGGGTGAGGGTGGTCGCCGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTCGCGCCGGCGGCCGCGTGGACGCTTGCTTTCGTCCGGAGCAAAACGCACTGAAAATTATTTTCATTATTTTTGTCGGCTTTCCGCGACTGGTCCGGCT TTACCGATTGAACACCCTTCAACGACTCCAACGGATCCCGTTCATGACCGCCACCGCCGTCGTCCTCCGCAATGCCCCGTCGTCCCTCGATTTCCCCCGC GCCTCGCGCCTGAGCCGTTCGGTGCGCGCGGCCCTGCTGTCGTTGGCCATGGCGGCCGGCGCGGCGCCGCTCTGCGCCTCGGCCGCCGAAGCGGCGGCGG AACAGGCGCGGCCCTATGCGATCCCCGCCGGACAGTTGGGCGACGTGCTCAACCGCTTCGCCCGCGAAGCCGGCATCACCCTCTCGGCCACTCCGGCGCA GACCGGTGGCTACAGCTCCCAGGGGTTGCGCGGCAGTTTCACCGTGCAGCAGGGCCTGGCCCGGCTGCTCGCCGACACCCCGCTGGAAGCGGAAGACCAG
Amino Acid Sequence
>peptide ABC transporter substrate-binding protein
MSGAVDGTRGRVDEAVVRQAIHWLVRLRSQPADDRLQRACAAWRAEHGEHERAWQQVSALNEELQGRFKALPGGVAYGTLDSSAQRLQRRQALKLLSLLV AGGAVAWVGRDSLPWQRLSADYSTATGERRSIELVDGTRLQLNTDSAVDVRYDAGQRLILLARGEIFLASGADTQSPTHRPLRVRTAQGLFEALGTRFNV RLQDAATCLSVSEGSVRIDAFGARPLQAPVAEAGQSYRIAADGVRRLERPQMDAVAWADGLIVTRDMRLADFLAEVARYRNGYLGCAAEVADLRLSGVYR LDDTDKLLQVLARTLPVRLQRHTRWWVRVVAA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site