Pseudomonas sp. P179, HMPREF1224_05587

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. P179 genomic scaffold acBRO-supercont1.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGAACTATGCAGCCGATCCGGGATTCATGGCCTGGGCAGGCCATACTGCCTTACAGGCATCCAGTTGGACGCCACCTGCCAGAACACCCGCCTATAGCCT TCTGCAGGTCGGCGGCAGCAACATCCTGCTAATCACCTGGCATGCCCCCCTTGGCGTGTCCTTGCTACCGATCATCGTGGGCTCGATGAGCGGTGGAGCC TTGATCGACGCTTATCTGGCGCTGGATCAAAGCGGACTGCTCAACAACCCGATGCTCGCGATCGGCGTCGTCCCGGACTTCATCGTCATCGCAGGCGACA TGAACGCCAAGCCGGCAGCACTGGGCAAGAGCTATGCCGGCTATACCCCACTGGACAACTTCACCGGGGTTGCCAATAACCTCGACCACATTATGGCGAC ATCGCCGCCACATACCGCATTCAACTTTTCCGAGGACTACAGCACCGCCACTGCTAGTACCCACGACATTCTCTGCGCCCGAATGAACTGGTGACCGACC
DNA Sequence for Gene
>HMPREF1224_05587
ATGTCTCGCTGCACTGATACCAGCAGCCTCTCATTAGTCGCCGAGTTGTTGAGCGACCTAAATCTGGAAACCCTAGCCGGAGGCGAGAGGCTGAATACAT TGGACAGCATGTCTCTCCAGGGCAACAGCTCCACGTCGCTGACACTATCCAACACCGTCGCCTCGCACCTCAGCGCCACCCTGCACAACGACTCCCAGCA ACGCCCCCTCGACGCCCTGGTCGCCGAAATCCACCAGCTCCCCGCCGACGCAACTGCCGACCGTTTTCAACTCGTACTCAGACCATGGCTCTGGTGGCTG ACCCTGGCCAGCAACAACCGCGTGTTCCAGAACCTCGCCACCAGCGACATCGTCACCACGATCTTCAAGGCCCACGGCTTCACCGACTTCAAGCTGTCGC TGACCGGCAGCTACGAGCCCCGTGAATACTGCGTGCAGTACGGCGAGACCGACTTCGCCTTCGTCTCGCGCCTGCTGGAGGAGGAAGGCATCTTCTGGTT CTTCATCCACGAAGTGGGCAAGCACACGTTGGTGCTGGCGGACAGCAACGACGCCTTCCCGCCGATCCCCAACGGGCCCAAGGTGCCATACCTGGACCAG GAGATCGGCGTGCGCGAACTGCACGGCATCCGTTCGGCGCAGTACTGCCTGCAGGCGGTCGCCGGGACCTACAGCGCCACCGACTACGAGTTCACCACAC CCAGTACTTCGCTCTATTCCCAGGCACAGGCCGAGGCCGGGCCGCGCGCACGGTACGAACACCCCGGCGGCTACACCGCCAAGGGCCGCGGCGATGCGCT GACCAAGCAGCGCGTGGACGGCCTGCGCAGCCAGGAGACGCGCCTGATCGGCGAGAGCGACTGCCGCTGGCTGGTGCCCGGCCACTGGTTCACCCTCAGC GGGCATGACGACGATTCGCTGAATATCGACTGGGTGCTGACCTCGGTCACCCATGACGCCAGTCACGCGCACTACCGCAACCGCTTCGAGGCGATCCCCA AGGCCACCGCCTACCGCCCCGCGCGGGTCACGCCCAAGCCGCGCATGCACACCCAGACCGCCCTGGTGGTGGGCAAGGCCGGCGAGGAGATCTGGACCGA CCAGTACGGCCGGATCAAGATCCAGTTCCCCTGGGACCGCGACGGCAAGAACGACGAGACCTCCTCCTGCTGGGTGCGCGTGGTGCTGCCCTGGAGCGGC AAGGGCTTCGGCATGCAGTTCGTGCCGCGCATCGGCCAGGAAGTGATCGTCACCTTCATCGACGGCGACCCGGACCGCCCGCTGGTCACCGGCTGCGTCT ACAACGGCGACAACGCCCTGCCCTACGCGCTGCCGGACAACCAGACGCAGTCCGGGATCAAGACCAACTCGTCGAAGGGCGGCGGCGGTTTCAACGAGCT GCGCTTCGAGGACAAGAAGGACGCCGAGGAAGTCTTCCTCCAGGCGCAGAAGGACCTCAACGTCAACGTGCTCAACGACAGCACCGCCAGCATCGGCCAC GACGAGACCCTGACGGTGCAGAACGCCCGCACCCGCACGGTGAAGGAAGGCGACGAGACCGTCACCCTGGAGAAAGGCAAGCGCACGGTGACCATCCAGA CCGGCAGCGACAGTCTGGATGTGAAGGACACGCGCACGGTGACGGTGGGCGCCGACCAGACCCACAGCACCGGCGGCAACTACAGCCACAAGGTCAGCGG CAACTTCGAGCTGACGGTGGACGGCAACCTGACCATCAAGGTCAGCGGCACCCTCGCCCTGCAGAGCGGCGGCAGCCTGACCCTGAAGAGCGACGCCGAC CTCGCCGCCCAGGCTGGCACCTCGCTGACCAGCAAGGCCGGGACGTCGCTGACCAACCAGGCCGGCACCTCCCTCACCAACAAGGCCGGCACCAGCCTGA CCAACGATGCCGGCGTCAGCCTGACCAACAAGGCCGGCGCCGAACAGACGGTGGACGGCGGCGGCATGCTGACCATCAAGGGCGGCCTGGTAAAGGTCAA CTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGAGAAGCGCATGGCGGCATCCGGCAAGCTCGACCTGGTTCGTGGCGACAGCCATCTCGCCGGCAACCTGCTCGACGGCAGCCTGGAAGGCCCGTTGCGC ATCGACGAGCACGACAGGCCGCAGGCCAGCCTCGGCTACCGGCAGGGCCAGTTGCACGGCGCCAGCACCCTGTTCCATCCCAACGGCAAGGTCTCCGCGC AACTCGCCTTCGTCGACGGCAAGCTGCACGGGCCGGCGAGTTTCCATGCCGCGGAAGGCTGGTTGCAGCGCAAGGCGCACTACCGCAACGGGCTGCTCCA CGGCGAAGCGTTCAACTATTTCGCCAACGGCCAGGTGGCCGAGCGCGAGCATTACCGCGACGGCGTACGCGACGGGGTCTACCAACGCTTCCATGGCAAT GGCCAACTGGCCTTCGACGGACGCTACCTGAACGGCCAGCTACTGGACGGCGCCCAGCCGTTCGCCGACGACGGCCGGCCGCTGGACAGCGAGGGCAAGC
Amino Acid Sequence
>type VI secretion system Vgr family protein
MSRCTDTSSLSLVAELLSDLNLETLAGGERLNTLDSMSLQGNSSTSLTLSNTVASHLSATLHNDSQQRPLDALVAEIHQLPADATADRFQLVLRPWLWWL TLASNNRVFQNLATSDIVTTIFKAHGFTDFKLSLTGSYEPREYCVQYGETDFAFVSRLLEEEGIFWFFIHEVGKHTLVLADSNDAFPPIPNGPKVPYLDQ EIGVRELHGIRSAQYCLQAVAGTYSATDYEFTTPSTSLYSQAQAEAGPRARYEHPGGYTAKGRGDALTKQRVDGLRSQETRLIGESDCRWLVPGHWFTLS GHDDDSLNIDWVLTSVTHDASHAHYRNRFEAIPKATAYRPARVTPKPRMHTQTALVVGKAGEEIWTDQYGRIKIQFPWDRDGKNDETSSCWVRVVLPWSG KGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNALPYALPDNQTQSGIKTNSSKGGGGFNELRFEDKKDAEEVFLQAQKDLNVNVLNDSTASIGH DETLTVQNARTRTVKEGDETVTLEKGKRTVTIQTGSDSLDVKDTRTVTVGADQTHSTGGNYSHKVSGNFELTVDGNLTIKVSGTLALQSGGSLTLKSDAD LAAQAGTSLTSKAGTSLTNQAGTSLTNKAGTSLTNDAGVSLTNKAGAEQTVDGGGMLTIKGGLVKVN
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site