Pseudomonas aeruginosa Stone 130, HMPREF1223_13106
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa str. Stone 130 genomic scaffold aczIk-supercont1.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGGTGGCCTGCATCGACCTGCCCACCTGCCATGGCGAGTGGTGGCCGCGGATGGACTTCGCCAACGGCTTCCACCTGACCCAGCACATCGGCCCCAAC TACCTCGGCGGCCAGCTCGACAGCGACGCGCGCACGGCGATCCACATGACCCACCGGATCGGCGCGCTGTGCGTGACCCTGGTCCTCCTGCTGCTCGCCT GGCGCCTGCAGCGCAGCGGCCTGGTCTGGCCGACCGCGCTGATGCTGCTCGGCCTGTCGCTGCAGATCGGCCTGGGCATCAGCAACGTGCTGCTGCACCT GCCGCTGCCGGTGGCGGTGGCGCACAACGGCGGTGGCGCCCTGCTGCTGCTCAGCCTGGTGCTGGTCAACTATCGCCTGCGCGCGCCGGCCAGCGTCCGC GCGCCGGCACCGTCGCCGCAGCGCGTGCGCCGCACGCTGCCGCCGGCGCAAGGTTCGCGGCTGAAGGCCGCCTGACAGACAGAAGGATGGAGGTAAGGAT
|
|
| DNA Sequence for Gene |
>HMPREF1223_13106
ATGGCCACCGTCATCGATCGCCACAGCCAGCCGACCTGGCGCGACTTCCTCGAACTGACCAAGCCCAAGGTCGTGGTGCTGATGCTGATCACCTCGCTGA TCGGCATGCTGCTCGCCACCAAGGCGCCGCTGGATGGCTTCGTGCCCTGGCAGGTGCTGATCTTCGGCAACCTCGGCATCGGCCTTTGTGCCGGCGCGGC GGCGGCGGTCAACCATGTGGTGGACCGGCGCATCGACTCGATCATGGCGCGGACCCACAAGCGGCCGCTGGCCGAGGGCCGGGTGTCGCCGAGCATGGCG CTGGGCTTCGCGCTGCTCCTGGCGCTGGCCGGGATGGCCGTGCTGCTGGCCTTCACCAACCCGCTGACGGCCTGGCTGACCCTCGCCTCGCTGCTCGGCT ACGCGGCGCTCTACACCGGCTTCCTGAAGCGCGCCACGCCGCAGAACATCGTCATCGGCGGGCTCGCCGGGGCGGCGCCGCCGCTGCTCGGCTGGGTCGC CATCACCGGCCACCTGAGCGCCGAGCCGCTGTTGCTGGTACTGATCATCTTCGCCTGGACCCCACCGCACTTCTGGGCGCTATGCATCCACCGCAAGGAC GAATACGCCAAGGCCGACATCCCGATGCTGCCGGTGACCCACGGCGAGCGCTACACCAAGCTGCACATCCTGCTCTATACCCTGGTGCTGTTCGCGGTGA GCCTGATGCCGTTCGTCATCCACATGAGTGGGCTGGTCTACCTGCTCTGCGCCCTGGCCCTGGGCGCGCGCTTCCTCGACTGGGCCTGGGCGCTCTACTG TGACAGCCGGCCACATGCGGCGATAAAGACCTTCAAGTACTCTATCGTCTACCTGTTCCTGCTGTTCATGGCGCTGCTGGTGGACCACTATCTGCCGCTG AAGCTGCTTCTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCCCACTCTAGAGCCTTGCCCACCCATGACTCGAGTCAACAAGACCGTCCTCGTCCTCGTCGCCCTGGTCGCCCTGGTCCTCGGCCTCACCGTGCACAAG GTGCTCACCGCCCAGCGCCAGGCCGATCCCACCGTGCTGCTCGACGCCGGCATCGTGATCCTGCCGCAGACGCGCAAGGTGCCGGCGCTGGAGTTCACCA ACCAGGACGGCCAGGCGGTCAGCACTGCCAGTCTCAAGGGTCGCTGGCACCTGCTGTTCTTCGGCTACACCTTCTGCCCCGATGTCTGCCCGACCACCCT CGCCCAGCTCCGCGAATTGCAGGGCAAGCTGCCGCAGGAGGTGCGCGACGACCTGCAGGTGGTATTCATCAGCGTCGATCCGAACCGCGACACGCCGCAG CAGATCAAGCAATACCTGGGCTACTTCAACGCCGGCTTCCAGGGGCTCACCGGCACTCCGGAGAACATCCAGAAGCTGGCCAACGCCATGAGCATCCCCT
|
|
| Amino Acid Sequence |
>protoheme IX farnesyltransferase
MATVIDRHSQPTWRDFLELTKPKVVVLMLITSLIGMLLATKAPLDGFVPWQVLIFGNLGIGLCAGAAAAVNHVVDRRIDSIMARTHKRPLAEGRVSPSMA LGFALLLALAGMAVLLAFTNPLTAWLTLASLLGYAALYTGFLKRATPQNIVIGGLAGAAPPLLGWVAITGHLSAEPLLLVLIIFAWTPPHFWALCIHRKD EYAKADIPMLPVTHGERYTKLHILLYTLVLFAVSLMPFVIHMSGLVYLLCALALGARFLDWAWALYCDSRPHAAIKTFKYSIVYLFLLFMALLVDHYLPL KLLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|