Pseudomonas aeruginosa Stone 130, HMPREF1223_09335
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa str. Stone 130 genomic scaffold aczIk-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGCCGTCGGCCAGGGCGCCGACGGTGATCCATCCGGAATGCGAGTGGGCGGACATAGGGTTCTCCTCGTCGTGGGAAACCCATGCTGGCCTGTCTTCG AGTATCCCGATATCGACCGGATGGTTGATAGGTCGATATGCCACGGAAATAGTACGGAGCGGCGAAGGGAAAGTTATCGAAGATGAAGTCTTAGATGAGT TTTTGTTTCTTCTTTTTTGGTTTTTTAGTTAATGGGTTCCTGTTCTTCTATAAGTATTTTCTGAATTTATTCTTATGTACCTATTGGCTGTTATCGGAAA TGGACTACATATGTTTTCGTATGATTATTATTTTTAAATCCTGTCTTTCTTTCTAGTATTTGGGTCTGCGTTTATCAGGGCGCAATCTTCGGCTGTCGCG TAATGGTCGGAGGCGCTCTAGGCGGCCGTCCCGGTTGCGCGCAAAGGCTTGGCTACCTTGGCCGGTTCGTACTGCATCGGCTCTCCAGGGAGCAGCCAGG
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| DNA Sequence for Gene |
>HMPREF1223_09335
ATGTTCCACAACTCCAAAGGAAATCAGATGAACAAGTTCAAACGTGCAATTCTTGCGCCCCTCGTTGCGTCGGGCACCCTTCTCGCGCTGATGTCCCCCG TGGCCCATGCGGTCGATGGGATCGTCAACTTCTCGGGCAACATCACCGACGTCGCGTGCGATATCAACGGCCAGGCGCCGGGTGCGGGCAACGTCACCAA CGTCGACCTGGGTATCGTGGCGCCGACCCATTTCACCGCCGTCGGAACCAACTCCACTTTCCAGGAGTTCGATCTGGTCCTCTCCGGTGCCGGCTGCACC AATGACAAGAAGGTTTCCATCGCCTTCGATACGGTCACCAACGTCGACCGTATCAGCGGCAACCTGATGCTGATGGGGCCGTCGAAAGCCAAGGGCGTGC AGATCCAGATCTTCAACAATTCGGCGGCCAACACCACGAAGATCCCGCTGGGCTTGGTCGAGGCCGCCCCGCAGAAGGCAACCATCGACAAGAACACGGC GACCCTGAAGTACAAGGCCTCCTATGTGTCCACCGAGAAGACCGTGATCGCGGGTACCGGCCTGTCCCATATCCGCTACCTCCTGGCGTACGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCGGTCGACGGACGAAGAGGTGAGGCCATGGCGCCGCTAATGCATCGTTTTCATTCTTTCGTGGCGGCAAGCGCCGTGGCCATCGCCCTGTGCGTCG GAACGGCTCACGCCGGGCTGATCGCACAGGGCACTCGCGTCGTCTTTCCGGCCAGCGAGCGCGAGGTCACCTTGCGGATCAGCAATACCTCCGGCACTCC CGTGCTGGCGCAAGCCTGGATCGACGATGGCCGGCAGGACGTTCCCCCCGAGGAACTGCAGGTTCCCTTCAGTGTCACGCCGGCCGTGACGCGAGTGGAC CCCAATGGCGGCGCCGTATTGCGCATCGCCTACCTGAAGGCCCCGTTGCCGACGGATCGCGAATCGCTGTTCTGGCTGAATATCCTGGAAGTTCCGCCCA GGGACGAAGACGAAAACAATGCATTGCAGTTTTCCTTTCGTTCGCGCTTCAAACTCTTCTTTCGACCCAGCCAGTTGAAGAGTGTCGATTCGGCTGCCGG
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| Amino Acid Sequence |
>fimbrial protein
MFHNSKGNQMNKFKRAILAPLVASGTLLALMSPVAHAVDGIVNFSGNITDVACDINGQAPGAGNVTNVDLGIVAPTHFTAVGTNSTFQEFDLVLSGAGCT NDKKVSIAFDTVTNVDRISGNLMLMGPSKAKGVQIQIFNNSAANTTKIPLGLVEAAPQKATIDKNTATLKYKASYVSTEKTVIAGTGLSHIRYLLAYE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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