Pseudomonas aeruginosa Stone 130, HMPREF1223_09149
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa str. Stone 130 genomic scaffold aczIk-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCCCGATGGCAAGGACGCCCAGGGCCGCGACCGCTGGGAGGCCATCGCCAACGGCAACGACGGCGCCGCCCTCGGCCGCGAGCTGGAGATCGCCGACCT GCTGCGCTTCGTCCAGCGCGCCGAGGTGCGAAACACCGTCTGGCTGACCGCCGACGTGCATTACTGCGCAGCCCACCACTACAGCCCGGAGCGTGCCGCG TTCAAGGACTTCGCGCCGTTCTGGGAATTCGTCGCCGGGCCTCTCAATGCCGGTAGTTTCGGACCCAACGCGCTGGATGGCACGTTCGGCCCGCAGGTGA TGTTCCAGAAGGCCCCGCTGGTCCAGAACAGTTCCCCCTTCGCCGGCTACCAGTTCTTCGGCGAGGTGGAGATCGATGCGCAAAGCCGCGCGCTCACCGT CACCCTGCGCGACCTCGACGGCGAGCCGGTGTTTTCCCAGGAACTGCAGCCCGACGGCGCCTGAGCCGCGGCGACCCCATTCCGATAAAGGAGTATCCCG
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| DNA Sequence for Gene |
>HMPREF1223_09149
ATGCACCCCTTGCGTAACGCCGCCCTGCTGGGCGGCCTGGCCCTGCTGGGCCTGCCGGTGGCCAACGCCGCCGAGCTGATCATCTCCGAGTATGTCGAAG GCAGCGGCAACAACAAGGCGCTGGAGTTCTACAACAGCGGCAGCCAGGTCCTCGACCTCTCCGCCTACCGCGTCGAGTTCTATTTCAACGGCGCCAGCGC GGCGGGCCGCAGCATCGACCTGAGCGGCAGCCTGGCGCCGGGCAAGACCTTCGTCCTCGCCAACGGCGTGGCCGACCCGGCGTTGCTGGCGCTGGCCAGC CAGCGGGTGGAAGGCAGCTGGTTCAATGGCAACGATGCGGTGCTGCTGCGCCGGCGCAGCGGCGAGATCCTCGACAGCCTCGGCCAGGTCGGCTTCAACC CCGGCACGACCTGGGGCAGCGGCGATGTGCAGACCCTCGACCGGAGCCTGGTGCGCAAGGCCGACATCCGCGACGGCGACAGCGATCCCAGCGACGCCTT CGACCCGGCGGCGCAATGGCTGGGCTACCCGCGCGACACCTTCGCCAACCTCGGCCAGCATGGCGCTGGCGAGCCCGGCGGCGGCGAGGAGGCCGGCCTG CGACCGATCCACGAGGTGCAGGGCGCCGGCGCCGAAAGTCCGCTGGTGAACCAGCGGGTCGCCATCGAGGGCGTGGTGGTCGGCGACTTCCAGAACGCCA GCGAGCTGAAGGGCTTCTACGTGCAGCAGGAAGATGCCACGGTGGACGGCGACCCGGCGACCTCCGAAGGCATCTTCGTCTACGACGGCGGCAACGGCAG CGACGTCAAGCTCGGCGACCGCGTCCGGGTGACCGGCCAGGTCCGCGAGTTCAACGGCCTCACCGAGCTGGTCGGGCCGCTGCAGGTCAGCGTCCTGGCG AGCGGCGTGGCGTTGCCGACGCCGGCCGGCATCAGCCTGCCGCTGGCCAGCGCCGATGCGCTGGAGCGCTACGAAGGCATGCGCGTGCAGCTCCGCCAGA CGCTGACCGTCAACGAGGTCTACAACCTCGGCCGCTACGGCGAGGTCCTGCTGTCCTCCGGCGGCCGCCAGATGACTCCGACCAACGTGGTGGCTCCCGG CGAACAGGCCAAGGCCATGCAGGCGCGCAACGACCTCGACCGGATTCTCCTCGACGACGGCCGCAGCGGGCAGAACCCCGACCCGATCCGCTACCCGGCA CCGGAACTGAGCGCCTACAACAGCCTGCGCGTCGGCGACCGTACCAGCGCCATCGACGGCGTGCTCGACTACTCGGCCGGCAGCTACCGTATCCAGCCGT TGCAGACGCCGACCTTCGAGGCAGCCAATCCGCGTCCGGCCCAGCCGGCGGTGGAAGGGCGCCTGCGGGTGGCCAGCTTCAACGTGCTCAACTACTTCAA CGGCGATGGCAAGGGCGGCGGTTTCCCCACCTCGCGCGGAGCCAACACGGCCGAGGAGTTCCAACGGCAGAAAGCGAAGATCGTCGCGGCGATCCTCGCC TCGAAGGCGGACATCGTCGGCCTGATGGAGATCGAGAACGACGGCTACGGCGAGTTCAGCGCCATCGCCGACCTGGTCAACGGCCTCAACGCCAGCCTAC CCCAGGGCCAGCGCTATGCCTTCGTCAACCCGAACCGGGCGAAGCTGGGCAGCGACGAAATTGCCGTGGGGCTGATCTATCGCGGCGACAAGGTCCGCAC CTATCGATCCGCGGCGGTGCTCGACAGTTCGGTGAACCCGGAGTTCGACGACACCCGCAACCGTCCGACCCTGGCCCAGACCTTCCAGGAGATCAATGGC GGCGAACGCCTGACCATCGCGGTGAACCACCTGAAGTCGAAGGGCTCGGCCTGCGACGGCGACCCGGACACCGGCGACGGCCAGGGCAACTGCAACCTGA CCCGGGCGCGCGCCGCCCAGGCCCTGGTGGACTGGCTGGCGGGCGATCCGACGGGCGCCAAGGAGCCTGATCGCCTGATCATCGGCGACCTCAATTCCTA TGCCAAGGAAGACCCGGTGAACGTCATCCGCAGCGCCGGCTACACCGACCTGGTGGCGCGTCAGGCGGGCGCAGGAAAGGGCTATTCCTACGTGTTCTCC GGGCAGTCCGGCTACCTTGACCACGCCCTCGCCAACGCCAGCCTGGCGCGCCAGGTACGCGGCGCGGTGGAGTGGCACATCAACGCCGACGAGCCCCGGG TGCTGGACTACAACGTCGAGTTCAAGACCCCTCGGCAGCAGGACAGCCTGTACAACGCCGAGCCGTACCGGGCCTCCGACCACGACCCGGTGGTGATCGG TATCGACCTGCGCCGGGTGGCGATGAAGAAGCACCGCAGGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGCGGATAGCGCCCGTGGCGTTGGTCGCCATGCAGAAAGGCCACCCTCGGGTGGCCTTTCTGCATGGCACGTGGGCCTGTAGGGCGAATAACCGCTTG CGGTTATCCGCCGTTGCGGCGGGATACCGGCGGATAACGCCGGTGGCGTATTCGCCCCACGGAACGGAGCCCCCTCCAGGGTGGCCTTCCAGTGTGGCAC GTGGGCCTGGTAGGGCGAATAATCGCCTGCGGTTATCCGCCGTTGCGGCGGGATGCCGGCGGATAACGCCGGTGGCGTATTCGTCCCACGGAACGGAGGT CACTCCAGGGNNNNNNNNNNCGGTTATCCGCCGTTGCGGCGGGATGCCGGCGGATAACGCCGGTGGCGTATTCGTCCCACGGAACGGAGGTCACTCCAGG GTGGCCTTGCTGCGTGGAACGTGGGCCTGGTAGGGCGAATAACCGCCTGCGGTTATCCGCCGTTGCGGCGGGAGGTCGGGGATAACGCCGGTGGCGTATT
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| Amino Acid Sequence |
>extracelullar DNA degradation protein, EddB
MHPLRNAALLGGLALLGLPVANAAELIISEYVEGSGNNKALEFYNSGSQVLDLSAYRVEFYFNGASAAGRSIDLSGSLAPGKTFVLANGVADPALLALAS QRVEGSWFNGNDAVLLRRRSGEILDSLGQVGFNPGTTWGSGDVQTLDRSLVRKADIRDGDSDPSDAFDPAAQWLGYPRDTFANLGQHGAGEPGGGEEAGL RPIHEVQGAGAESPLVNQRVAIEGVVVGDFQNASELKGFYVQQEDATVDGDPATSEGIFVYDGGNGSDVKLGDRVRVTGQVREFNGLTELVGPLQVSVLA SGVALPTPAGISLPLASADALERYEGMRVQLRQTLTVNEVYNLGRYGEVLLSSGGRQMTPTNVVAPGEQAKAMQARNDLDRILLDDGRSGQNPDPIRYPA PELSAYNSLRVGDRTSAIDGVLDYSAGSYRIQPLQTPTFEAANPRPAQPAVEGRLRVASFNVLNYFNGDGKGGGFPTSRGANTAEEFQRQKAKIVAAILA SKADIVGLMEIENDGYGEFSAIADLVNGLNASLPQGQRYAFVNPNRAKLGSDEIAVGLIYRGDKVRTYRSAAVLDSSVNPEFDDTRNRPTLAQTFQEING GERLTIAVNHLKSKGSACDGDPDTGDGQGNCNLTRARAAQALVDWLAGDPTGAKEPDRLIIGDLNSYAKEDPVNVIRSAGYTDLVARQAGAGKGYSYVFS GQSGYLDHALANASLARQVRGAVEWHINADEPRVLDYNVEFKTPRQQDSLYNAEPYRASDHDPVVIGIDLRRVAMKKHRR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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