Pseudomonas sp. GM41(2012), PMI27_005803
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCTCTGGGTGCTGTTGATCTACTTCGGCACGGTCAACCTGATGCGTGCCCTGGGCGAGTTCTTCGGCAACCCCGACCTCGAACTCAATGCCTTCGCCG CTGGCGTGATTGCGCTGGGGCTGTGCTTCGGCGCCTACGCCACGGAAGTGTTTCGTGGTGCAATTTTGGCTATCCCCAAAGGTCACCGCGAAGCGGGTGT GGCGTTGGGCCTGTCGAAATTCCGTATCTTCACCAAACTGATCATGCCGCAGATGTGGCGCATCGCCCTGCCTGGGCTGGGCAACCTGTTCATGATCCTG ATGAAAGACACTGCACTGGTGTCGGTCATCGGCCTGGAAGAAATCATGCGTCACGCGCAAATCGGCGTGACCGTGTCCAAGCAGCCGTTCACCTTTTATA TGGTGGCCGCGTTCATGTACCTGGGCCTGACGGTTCTCGCCATGACCGGCATGCACTTCATGGAAAAACGCGCCGCTCGCGGCTTCGCGAGGAGCACCCA
|
|
| DNA Sequence for Gene |
>PMI27_005803
ATGAACTGGGAAGTCATCATCAAGTGGCTGCCGAAACTGGCTCAGGGCGCGACACTGACCCTGGAACTGGTGGCCATCGCCGTGATCGCCGGTTTGCTGC TGGCGATTCCGCTGGGCATCGCGCGCTCGTCACGACTCTGGTACGTGCGGGCATTCCCCTACGGCTACATCTTCTTTTTCCGTGGTACGCCGTTGCTGGT TCAGCTGTTCCTGGTCTACTACGGGCTGGCGCAGTTCGACGCGATCCGCAACAGCTCGATGTGGCCGTACCTGCGCGATCCGTTCTGGTGCGCCACGGCG ACCATGACCTTGCACACCGCGGCCTACATCGCCGAAATCCTGCGCGGCTCAATCCAGGCGATTCCAAAGGGCGAGATTGAAGCTGCCCGGGCGCTGGGCA TGTCCCGGGCCAAAGCGATGTTCTACATTATCCTGCCCCGCGCAGCCCGCATCGGCCTGCCGGCCTACAGCAACGAAGTCATCCTGATGCTCAAGGCCAG CGCCCTGGCCAGCACCGTGACCTTGCTGGAACTGACCGGCATGGCCCGCACCATCATTGCCCGGACCTACCTGCCGATTGAAATCTTCTTCGCCGCGGGC ATGTTCTATCTGTTGATGGCCTACGTGCTGGTTCGCGGCTTCAAGCTGCTGGAGCGCTGGCTGCGCGTCGATGCCTGCCAAGGGCGTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTCCCACGTGCTGACGGGCGAGGCCCTACTCGCCCGCTTCACGGCGCTGGATGCTTTTCTGATCGAGCATCAGGCGTTATGGAAGCCTCGTCCGTTTACT CATCTGCGGCTTCCGTGGGAAACGTCCTACCCAGAGTTGTCTGTATGGCTACGCGGCAGGTCATTGGACGATGCGGAAAATGCTCATAACCAACCTGCTC TTCTGGAGGCGCCGGAGCCATTCGCTTCACTGGCGGCGCTTTCCCTTGAGCTGAGCGCTGTAGGTGAATTGCCGCCTCATGCACTCGATGTAGCTGGCCA TCGGCTGAATGTCGATGTGCCGGGGCGCAAGTGGCAGCAGATCGAGGCGTTTGCCAGTCGGCTGGAATTTTCTGAGGCGCCGATGCATTGGCTGGATTGG TGTTCAGGCAAAGGACATCTGGGGCGACGCCTGTTACAAACCGGTCAGCAGCTCACTTGCCTGGAATATGACCCGGCGCTGGTCGCCAGTGGCCAGGCAC
|
|
| Amino Acid Sequence |
>ABC transporter permease
MNWEVIIKWLPKLAQGATLTLELVAIAVIAGLLLAIPLGIARSSRLWYVRAFPYGYIFFFRGTPLLVQLFLVYYGLAQFDAIRNSSMWPYLRDPFWCATA TMTLHTAAYIAEILRGSIQAIPKGEIEAARALGMSRAKAMFYIILPRAARIGLPAYSNEVILMLKASALASTVTLLELTGMARTIIARTYLPIEIFFAAG MFYLLMAYVLVRGFKLLERWLRVDACQGR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|