Pseudomonas sp. GM41(2012), PMI27_005627
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTACTCCCGAAGAACTGTCGAAGAAGTTTCGCTACAACCAGCGCCGTGAATTGCGATTGCTGGAAGAAGCGGGCGGAGTGATTCGGCCGGTCGCCGAGT TTTCCAGCAGTGAGCTGGCGGCGATCTATTGCGACCTGTTCCAGCGTCGCTGGGGCTTCCCGGCGACGGGGGCCGAGCGCATGGCTGAGGTCATCGAGTT ACTGCGTGATTTGCTGATCGGCTCGGTGATTTTTCTCAACGATGCGCCAATAGCGATTCAACTGGTCTACCGTGTCGAGACACCGCAGTGGATCAGCGTC GAGTACATCAATGGCGGCGTCGATCCCGAAACCCGCGAATTCAGTCCGGGCAGCGTGCTGAGCTTTCTCAATACGCAAAGCGCCTGGGAGCATGCCCGGG CGTTGGACAAACCGTTGCGCTTTTCTTTCGGTCGCGCCGACCGTGAATACAAGGATCGCTGGTGCAATCCTGTGCCGGTGTTCACCGTATGAGTCAGCCC
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| DNA Sequence for Gene |
>PMI27_005627
ATGAACCGCAAGCAGCAATTGCTCAAGCGCCATCGACGCACCAAACGCATGGGTCTGCTCATCGCGCTGGTGCTATTGATTGCCATGGGTGTTTTGGTGA CCTGGTGGCTGCCGCTGGTGCTCGCGGTTCTGGGCTGGATTGCCCACGAGGCCTGGTTTGCCGACCATTTGTTTTATTCGCCCAAAGACGATTATCAGTA CAGCTTTCCACCGTACACCCAGCAGCCCAAGGTTCACCTTGACGGTGAGCGTTTGCGCCTGGACGACGGCGTCATGCTGGTCGACGACGCCACGCTGGTC TTGTCGCTGCGGATAAAAAGCACTTGGCTGGGACGCTTCATCGATCCCGTAGTCGAGTTGTCGGGTGGGGATAACCCGGACCGACAAACGTTCGAACGTG GTGTGAACGGCCTGCGTTACCTCAACCTCAGTGGTCAGGCGCAGGTTCTGTCGCGAGGTAAGTTACGCCTGCGTGGGCGTTTCTGCCGACTGCTGGGTGA GCCGGTGCTCAGGGCATTCGAGCATCCGGATTACAGCCGTCAACGGGTGATGGTGATCGCGCCCCACGCCGACGATGCCGAGTTGGCCGCATTCGGCTTG TACAGCAGCGCCAGTCAAAGCTGGATCGTGACCCTGACCGCCGGTGAAATCGAGGCCGGGCACTATCAGCAAATGGGGCTCAATGGCGTCGAAGCGTCTC GGTTGAAAGGCTCGCTTCGCGCCTGGGACAGTCTCAGTGTGCCGCTGTGGGGCGGTGTACCTCAGGAACGCTGCATTCAGTTGGGCTATTTCTGCCTGCA ATTGCCCACCATGCAAAGCACGCCGACCGAGGCCGTGGGGTCTCGTGAGGCACAACTGGGTGATACCCGATATTTTCGACGGTTCAATCCGTTTACCCTG GGCAGTGACGTCGATGGCATACCGTCCTGGAACAACCTTTTGGCCGACCTGAGTGAGTTGATCGAGCGTATCCAGCCTCAAGTCATCGTTTTGCCACATC CGCGTTTCGACCCGCACCCAGACCATCTATGCTCCCAGCAAGCGGTGATGCAGGCATTGAACGGTACAGCCTGGCAGCCCGAAACCTTATTGCATTACGC CAATCATCTACACGATAACGATCGCTGGCCAATGGGTGATGCCGGGACCGGTGTGACACTGCCGCCACAGATCAATAATCACGAACCGTTGCGTCCTTGG GCGCTTTGTTTGTCGACCGAAAAACAGTGGCACAAGGCTATGTCGTTGGGCATGATGCACGACCTTCAGCCCCGACTTCCCCTCAAGCGTCTACTTCGCC GGGCGATACAACGCTGTCTGGCGGCCCGACACTGGCCGGCTTTCGGCGAAAACGAGTTCTTCCGCAAAGCGGTGCGACGCCACGAATTATTCTGGGTCCA AGAGCTGTCTGGAAAGAGAGAGACCAATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGTTCTGTTTCTGGTGCAGAAAGAGCAGCGAGCGATCCTCGATCGACTGTATGACGGTATCGCCGAGCACTGCGACTGCGACAAGCGCGAGCTGACCAG CGCGGAGCAGGACGACTTGCGTGGATACTTTCGCAAGCATGTCGATGTGACCCGCTACGACCGGATTGTTTTTTTCCTGCGCTTCAAAAAAGAAATCAGA CAGGTGAGGTTCATACAAACCCTGCCCAATCTGGTTATTCTGGAACACGATGCGTACCAGAACTACATCCCGTGCAAGTACACCGGCAAGTTCAGTGCGC ATTACCGCAAGCTACCTTGGGTGCGGGTGATCAGCTCGGGCTTCATGGTCAGCCAGCGCTTGCGTGATGAAGGGTTTGACGCGCATTTCGTGCCCAAGGG CTACGATCAGGCACTGTTGCAAAACTGCCAGCGTGAACGGGATATCGAGTTGGGTTTTGTCGGCAGTCTCAACAGCGTGGCGTATGCCGGGCGCAAGGCC
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| Amino Acid Sequence |
>GlcNAc-PI de-N-acetylase
MNRKQQLLKRHRRTKRMGLLIALVLLIAMGVLVTWWLPLVLAVLGWIAHEAWFADHLFYSPKDDYQYSFPPYTQQPKVHLDGERLRLDDGVMLVDDATLV LSLRIKSTWLGRFIDPVVELSGGDNPDRQTFERGVNGLRYLNLSGQAQVLSRGKLRLRGRFCRLLGEPVLRAFEHPDYSRQRVMVIAPHADDAELAAFGL YSSASQSWIVTLTAGEIEAGHYQQMGLNGVEASRLKGSLRAWDSLSVPLWGGVPQERCIQLGYFCLQLPTMQSTPTEAVGSREAQLGDTRYFRRFNPFTL GSDVDGIPSWNNLLADLSELIERIQPQVIVLPHPRFDPHPDHLCSQQAVMQALNGTAWQPETLLHYANHLHDNDRWPMGDAGTGVTLPPQINNHEPLRPW ALCLSTEKQWHKAMSLGMMHDLQPRLPLKRLLRRAIQRCLAARHWPAFGENEFFRKAVRRHELFWVQELSGKRETN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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