Pseudomonas sp. GM41(2012), PMI27_002542
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTCGCGGCCTACACGCTCGTTCCACGTTTCACACACAATTTACGCACAGGTTTATCCACAGGTAGTACGTTGCAACACCCCCCAAAACGCATTATCTTG TACCCCGGCGCCAAAAAAACCCTACATGTAGGGTTTTGCACCAAAAACCAAACACAAACCGGATACCGATTTCAAGCGCTTTTATTGCCTCTTTCCGGTT GAACCAAACGTATTTTCGAAAGACCAAACCGCGCGTGCGGATGGCTACTGTTTTTGAGCCCGAAACGGCGATAACGGTACGGGTGTTGCAGTCAATTACT GTCACCCAACAGGATCCCGGTTTCAGGTTCAAGGCCTGGGACCAAAGACTTCGGCATGGAAGCGGCGCCCCAATAGCCCCTTCCTGATCTGTCCCGAAGT TGGTATGCCCGGCCCCTCGCCGGTTGTAGTGCTTCAGGACGGAACGGTGGGCACCCAGATGGTGCCCAAACAAACATAGAGAATGTGGAGACAACCCCCC
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| DNA Sequence for Gene |
>PMI27_002542
ATGCAAACCGACACAACTCGCGAGAACCCGCAGGGCACCTTGCCGCAGGCCGCAGATTCGACTTCGGATCTGTCCGCCACCGCGCCTGGTCAACTGCGCG TGATCAAGCGTAACGGCACTGTCGTTCCTTACACCGATGACAAGATCACCGTCGCCATCACCAAAGCGTTTCTCGCAGTTGAGGGCGGCACCGCTGCCGC TTCGTCGCGAATCCACGACACCGTTGCCCGTCTGACCGAACAAGTCACCGCGACCTTCAAGCGCCGCATGCCCTCGGGCGGCACGATCCACATCGAAGAA ATCCAGGACCAGGTCGAACTGGCCCTGATGCGTGCCGGCGAGCAGAAAGTGGCGCGCGACTACGTGATCTACCGTGACGGTCGCTCGAAAGAACGCGCCG CCCACGCACCGGCAGAGGAAGCAGTCAACGCTCACCCGTCGATCCGCATCACCCGCGCCGATGGCACCTTTGCTCCTCTGGACATGGGCCGCCTGAACAC CATCGTCACCGAAGCGTGCGAAGGCCTTGCAGAAGTCGACGGCGACCTGATCCAGCGCGAAACCCTGAAAAACCTGTACGACGGCGTGGCCCTGACCGAC GTCAACACCGCGTTGGTGATGACCGCCCGTACGCTGGTCGAGCGTGAGCCGAACTACTCGTTCGTGACCGCCCGCCTGCTGATGGACACCCTGCGTGCCG AAGGCCTGAGCTTCCTGGAAGTCGCCGAAAGCGCGACCCACCACGAAATGGTCGACCTGTACGCCAAGGCCCTGCCTGCCTACATCGCCAAGGGCATCGA ATTCGAATTGCTGAACCCGGTCCTGGCGACCTTCGACCTGGAAAAACTCGGCAAGGCAATCAACCACGAGCGCGATCAGCAGTTCACGTACCTGGGCCTG CAAACCCTGTACGACCGTTACTTCATCCACAAGGACGGTATCCGCTTCGAACTGCCGCAAATCTTCTTCATGCGCGTGGCCATGGGCCTGGCGATCGAAG AGAAGAACAAAGAAGACCGTGCGATCGAGTTCTACAACCTGTTGTCGTCCTTCGACTACATGTCGTCGACCCCGACCCTGTTCAACGCCGGTACTCTGCG TCCACAGCTGTCGAGCTGCTACCTGACCACCGTTCCGGATGACCTGTCGGGCATCTACCACGCGATCCACGACAACGCCATGTTGTCGAAATTTGCGGGC GGCCTGGGCAACGACTGGACTCCGGTTCGTGCACTCGGTTCGTACATCAAGGGCACCAACGGCAAATCCCAGGGCGTTGTTCCGTTCCTGAAAGTAGTGA ACGACACCGCCGTCGCCGTTAACCAGGGTGGCAAGCGCAAAGGCGCTGTCTGTGCCTACCTGGAAACCTGGCACATGGACATCGAAGAGTTCATCGAACT CCGTAAGAACACCGGTGATGATCGTCGTCGTACCCACGACATGAACACAGCCAACTGGATCCCTGACCTGTTCATGAAGCGCGTCTTCGATGACGGCAAG TGGACCTTGTTCTCGCCGTCCGAAGTGCCGGACCTGCACGACCTGACTGGCAAGGCCTTCGAAGAGCGTTACGAGTACTACGAAGCCCTGTCCGAGTACC CGGGCAAGATCAAGCTGTTCAAGACCATCCAGGCCAAAGACCTGTGGCGCAAAATGCTGTCCATGCTGTTTGAAACCGGCCACCCATGGCTGACCTTCAA AGACCCGTGCAACCTGCGCAGCCCGCAGCAGCACGTCGGCGTGGTTCACAGCTCGAACCTGTGCACCGAGATCACCTTGAACACCAACAAGGACGAGATC GCCGTTTGCAACCTGGGCTCGATCAACCTGCCGAACCACATCACCAACGGCAAGCTGGACACCGCCAAGCTGGAACGCACCGTGAACACCGCCGTTCGCA TGCTCGATAACGTTATCGACATCAACTACTACTCGGTGCCACAAGCGAAGAACTCCAACTTCAAGCACCGTCCGGTCGGCCTTGGCATCATGGGCTTCCA GGACGCGCTGTACCTGCAGCACATTCCTTACGGTTCCGACGCTGCCGTCGAGTTCGCCGACAAGTCGATGGAAGCGGTCAGCTACTACGCGATCCAGGCT TCCTGCGACCTGGCTGACGAGCGCGGCGCCTACGAGACGTTCCAGGGTTCGCTGTGGTCCAAAGGCATCCTGCCGCTGGATTCGCAACAGATCCTGATCG AGCAGCGCGGCCAGAAGTACATCGACGTTGACCTGAACGAATCCCTGGACTGGGCACCGGTTCGTGCCCGTGTGCAGAAAGGCATTCGTAACTCCAACAT CATGGCCATCGCACCGACCGCGACCATCGCCAACATCACCGGCGTATCGCAGTCGATCGAACCGACCTACCAGAACCTCTATGTGAAATCGAACCTGTCG GGCGAATTCACCGTGATCAACCCGTACCTGGTTCGTGACCTGAAGGCTCGCGGTCTGTGGGACTCGGTCATGATCAACGACCTGAAGTACTACGACGGTT CGGTGCAACAGATCGAGCGCATCCCGCAAGAACTCAAAGAGCTCTACGCGACTGCCTTCGAAGTGGACACCAAGTGGATCGTTGACGCGGCAAGCCGTCG TCAGAAGTGGATCGACCAGGCTCAATCGCTGAACCTGTACATCGCTGGTGCATCGGGCAAGAAGCTGGACGTGACCTACCGCATGGCCTGGTACCGTGGT CTGAAAACCACTTACTACCTCCGTGCCCTGGCCGCGACCAGCACCGAGAAGTCGACCATCAACACCGGCAAGCTGAACGCTGTTTCCAGCGGCGGCAACC ACGGTGAAGATTCGGTCCTGGCAGCACCTGCCGGCCCTGCTCCAGTGCCGAAGGCTTGCGCCATCGACGAGCCGGATTGCGAAGCTTGCCAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGAGCCGGTAGGCGCCGCAAGGCGCTTACTTGAAAACCCCCGATCAGTCCTCTGGATTGTCGGGGGTTTTCTTTTGCCTGCCTTTAAGGTCAAAAGAT CGCAGCCTCGTTTCACTCGACAGCTCCTACAGGAAATTGTGATCCCCTGTAGGAGCTGTCGAGTGAAACGAGGCTGCGATCTTTTGATATTGATTCTGTC CGGTACAAAAAAGCCCCTCGATCGAGGGGCTCTTTGTGCAGCGCTTTCAGCCAACCCGCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTGG GTGGAGATGGTCTTGGCGTTCGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTCGACCAGTTCATTGGTCAGGTTGACGTTGGACTCTTCCAGGGAGTTGG AGTTGATCTCGCCCAAGGTACCGGTGTTCGGCGCATCGTAGCCCGGGATACCCGACGCATAGGTTTCTTTCCAGCTGGTGCCGCCTACCGGTTGCAAACC
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| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit alpha
MQTDTTRENPQGTLPQAADSTSDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEE IQDQVELALMRAGEQKVARDYVIYRDGRSKERAAHAPAEEAVNAHPSIRITRADGTFAPLDMGRLNTIVTEACEGLAEVDGDLIQRETLKNLYDGVALTD VNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLSFLEVAESATHHEMVDLYAKALPAYIAKGIEFELLNPVLATFDLEKLGKAINHERDQQFTYLGL QTLYDRYFIHKDGIRFELPQIFFMRVAMGLAIEEKNKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAG GLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGK WTLFSPSEVPDLHDLTGKAFEERYEYYEALSEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEI AVCNLGSINLPNHITNGKLDTAKLERTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQA SCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLS GEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRG LKTTYYLRALAATSTEKSTINTGKLNAVSSGGNHGEDSVLAAPAGPAPVPKACAIDEPDCEACQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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