Pseudomonas sp. GM41(2012), PMI27_001957
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGCCAGATTCACCGCCAGCCACCCATTCACCGCCGTCTCCCCAGCCTCGGCAAACACCCGCTCCAGCAATTTCACCTGCTCACGCCGCAACGACTGCT CAAACCGTGCGCCATCGTCGGTCAGCTCCAGCAACCGCTTACGCTTGTCGGTTTCGGAAGCGACACTGTTCACCAAATGCATCTCCACCAACTGGCGCAG CGGAATGTTCAGCGCCTGTTTCGTTACCCCGAGCAACGCCAGTAACTCCTTGACGCTCAAGTTGGGGTAGCGCGCGATGAAAAACACTATGCGTTGATGC ACCCGGCTCAAGCCACGACGCTCGAGCATTTCGTCGGCTTTCGCGGTGAACGCCTGATAACCGAAGAAAAACGCTTCCATCGCTTGTTGCTGAGTAGCGG GGTTTTTAAGGTCAAGCATATTGACGTATCCGTTCGGTCTGTCGTAATTTCGGTCAACCAGTTTGACTCATTTTCCTCAGGCCTCGCTACCGGTGACCCC
|
|
| DNA Sequence for Gene |
>PMI27_001957
ATGGCATTTTCCGAACGTGTCTCGCGTCTTAAAAGTTCTTTGATCCGTGAAATCCTCGCCGCCGCCCAGCGCCCGGAAGTGATGTCGTTCGCTGGCGGCT TGCCGGCCGAAGCCATGCTGCCGAAAGTCGAGTGGGCCGACATGCCGCTGTCCATGGGCCAATACGGCATGAGCGAAGGTGAGCCGGCGCTGCGTGAAGC GCTGGCAGCAGAGGCTCGGGTGCTGGGCGTACCCTGCGAGGCGAGTCAGGTGTTGGTGGTCAGCGGCTCCCAGCAAACCCTTGATCTGGCGGCCAAGCTG TACATCGACAACGGCACCGAGATTTTGCTCGAAGCGCCGACTTATCTGGCGGCCTTGCAGATTTTTCAGCTGTTCGGCGCCGACTGCATCACGGTCCCGC TGGAGGCTGATGGCCCGAACCTGGCGCAACTACGTACTCGTCTGGAAAAACACCGTCCGGCGTTCATCTACCTGATTCCGACTTTTCAGAATCCTTCGGC CGTGCGCTACAGCGAAGCCAAGCGCGATGCCGTGGCAGCCTTGCTCGATGAGTTCGGCGTGACCTTGATCGAAGACGAGCCCTACCGCGAGCTGACCTTC GACGGTGGCAGCGCCACGCCGATTGTCAGTCGCTTGAAAAAGGCCAGCTGGATCTACACCGGCACCGTGTCGAAAACCCTGTTGCCCGGATTGCGAGTCG GCTATCTGATCGCCAGTCCGGATCTCTTCCCGCACTTGCTGAAACTCAAGCAATCGGCCGACCTGCACACTAATCGCGTGGGCCAGTGGCAAGCGCTGCA GTGGATCGGCACCGACAAATTCCAGCATCACTTGAGCGAGCTGCGGGACTTCTACCGGGTTCGTCGGGACGCGTTCCAGTCAGCCCTGGAAACGCATTTT GCGGATTTGGCAGACTGGAATGTGCCGCAGGGCGGGCTGTTTTTCTGGCTGACGCTCAAGCAGCCGCTGGACACGCGTACGTTGCTCAAGCCTGCACTGG CAGCGGATGTGGCGTTCATGCCGGGCGAGCCGTTCTTTCCTGAGCCGGACAGCAACCCGGGGCATTTGCGCCTGAACTTCAGCCACATCGACCCGGCACG GCTGGACGAAGGGCTTAAGCGTTTGGCTGCGGTGGTGCGTCAGGCTCAGGCGGCGGAAGCGGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGGGAGGGTAGAAACGAATAAACCGGCGCAAGGGCCGGTTTATTTTTGTCTGGAATTTGTGGTGTCTGGGCGGGCGCCTTCGCGGGCAAGTCGGATCGCC GCACCGCTCGCTCCTACAGGTTGGCGGTGTGTCCGAATGGTCACCTCGCCCGTGTAGGAGCGAGCGGTGCGGCGATCCGACTTGCCCGCGAAGAGGCCAT CAGCAGCACCACAAAACCATCAGGCCGCGGCAAACCGCTTGTCCAGATAATCGATGATCACCTTGGACTCATACATCCAGGTCGTCTGGCCATTCTCTTC GATGCGCAGGCATGGAACCTTGATCTTGCCGCCTTGCTCCAGCAAGGCCTGGCGATCCTGTTCGTTGTTCTTCGCGTCGCGCAGCGCCACCGGCACGTTC AAGCGGCGCAGGGTGCGGCGGGTTTTCACGCAGAACGGGCAGGCGTGGAACTGATACAGGGTCAGGTCCTTGGCCGCCGTGTTGACCTGAGCCTGAGCGG
|
|
| Amino Acid Sequence |
>GntR family transcriptional regulator
MAFSERVSRLKSSLIREILAAAQRPEVMSFAGGLPAEAMLPKVEWADMPLSMGQYGMSEGEPALREALAAEARVLGVPCEASQVLVVSGSQQTLDLAAKL YIDNGTEILLEAPTYLAALQIFQLFGADCITVPLEADGPNLAQLRTRLEKHRPAFIYLIPTFQNPSAVRYSEAKRDAVAALLDEFGVTLIEDEPYRELTF DGGSATPIVSRLKKASWIYTGTVSKTLLPGLRVGYLIASPDLFPHLLKLKQSADLHTNRVGQWQALQWIGTDKFQHHLSELRDFYRVRRDAFQSALETHF ADLADWNVPQGGLFFWLTLKQPLDTRTLLKPALAADVAFMPGEPFFPEPDSNPGHLRLNFSHIDPARLDEGLKRLAAVVRQAQAAEAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|