Pseudomonas sp. GM41(2012), PMI27_001241
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGTGCACCAATCGACACTTGGCCCAGAGCCTTGCGGCAGGTACGCCGTTGGGTTTTGAGCGCCCAGGGCCGGTGGCCTGGGCACGCCTGCGCAACCCGC CGAGTCCGCAAAGTTTGCCGCGGCTGGAGGGTGAATCGCGCTGGCGGCTGGTGTCGCAACTGACCCTCAATCATTTGTCGCTGGTCGAAGGACCGCAGGC GCTGGATGCGCTCAAGGAAATTCTCCAGCTGCACAACCTGCGTGACGAGGCCAGCGCCTTGCGGCAGATCGAGGGTTTGCTGAGCCTTGGCTGCGAGCGA GTGATCGGCCATGTCGGCGAAGACGCCTGGCGCGGTTGGCGCAATGGGTTGGAAGTGAGTTTGCAACTTGATTCGCAGCATTTTGTCGGCAGCAGCGCGG TGTTGTTTTCGGGCGTGCTGGCGCAATTCTTTTCACTGTATGCCACGGCCAATCGCTTCGTGCGCACGGTCCTGGTTCAGTCAGACAAGGAGGTGAAAAC
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| DNA Sequence for Gene |
>PMI27_001241
ATGGCAACCCCAAGCCGGCATGCCGCTCTCCCTCTAAACCTGAGTGAAAAACTACGACGCGATCCGCAAGCGTTTGAACTGTTGCAGGCGCTCTTGCTGC TGGAGCGTGAACATCCGCAAGCCGAATCCCTCGGTAGCGGCACCTCACCCCAGGCGGAAGCCATTCGCCTGCGCGGGCCGTTGACGCCGTTGTTTGCCGC CAGCGAAATCGAAAGCCTGACCCAGCAACCCGGCGAGCATCCGATCCTCAGCACACCGGTGTTCGGCCTCGGTGGCCCTGACGGTCCCCTGCCCTACGCC TATCAGGAATGGCTGCAACAACGGGCTCGAGCCAAGGATCATGCACCGGCCGAGTTCCTCGACCTGTTCCAGCATCGCTTGCTGAGCCTGTTGTACAAGG TGATGCGCAAACACCGGATTGCCGTGGGGTTCACCGTCCCCGGCGCCTCGGCGGTTCAGGCTCAGTTGAGGGCGCTGACCGGGTTGTTGCCCAAATCCTT GCAAGAACGCCAAGCCGTGCCCGACTCTGCCGTGCTGGCGTGTAGCGCGCTGTTCGCCGACGGGCGCCGCTCCCTCGCGGGTTTCGCTGCCATCGTGCGC GAGCACTTCGAACTGCCGGTGGAACTCAGCGCCTACGAAGGCGCTTGGCGCGAGATCCCGCCCGCCAGCCGCAGCCGCATGATCCCGGGCGGGCGCAACC TACAACTGGGCCGCACCGCCGTGGCCGGCACGCGGGTCTGGGATGAGCATGCCGGCTATCGCCTGACCCTTGGCCCGTTGACCTCGGCCCAGGCTGCGCG GTTTTTACCGGATGGCGAATCGCACCCGGCGCTGGCCAGCCTCAGCGCGCTGTATTTCGGCCCGGATCTGGATTGCACTCTGGTGTTGCTGGTGCGCGGC GCAGGGCCGATGAAACTCGGTCGCGAGGCGCCGCCGCTGCTCAGCTGGAACGGCGGTTTGCAACGTCAGACCAGCCTCGCCGTGCAACGCATCGAAACCC GTCTTCGTCAGCTGGAGATTACCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACATGGAACTGGCCAGCCTGATCGGACGCCTCAACCCGGACAACCGCCGCGCCTTGGAACGGGCAGCGCAACGCTGTCTGCAACGGGGTCATCACTATGT CGAAATCGAGCATTTGCTGCTGGAGTTGCTGGACATCGAGGGCGGTGACTTTGCCTATCTGTTGCCGCGCTTTGGCCTCGAACGCGATGCCCTGACCGCC GAAATCAACAAGGCCCTGGAGTTGTTCAAATCCGGCAGCACCCGCACGCCCGCACTGTCGACCCACACCACCGGGCTGCTGGAAGATGCGGTGGTCCAGG CCAGCGTACTGGGGCTGGACAGCATTCGCTCGGGCTTGTTGCTACTCGCGTTGATCGACCGCGATGAACGTCGCAGCCTGCTGCTCAACAGTGCTTCATC GCTGTTGAAGATTCCCCGGGAGGCGTTGCGCAGCAACCTGCTAGAATGGACCGAAAGCTCTCGCGAGCACGTCGGCGGCACGCGTCCTGTCGTGGCTGGC
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| Amino Acid Sequence |
>type VI secretion protein
MATPSRHAALPLNLSEKLRRDPQAFELLQALLLLEREHPQAESLGSGTSPQAEAIRLRGPLTPLFAASEIESLTQQPGEHPILSTPVFGLGGPDGPLPYA YQEWLQQRARAKDHAPAEFLDLFQHRLLSLLYKVMRKHRIAVGFTVPGASAVQAQLRALTGLLPKSLQERQAVPDSAVLACSALFADGRRSLAGFAAIVR EHFELPVELSAYEGAWREIPPASRSRMIPGGRNLQLGRTAVAGTRVWDEHAGYRLTLGPLTSAQAARFLPDGESHPALASLSALYFGPDLDCTLVLLVRG AGPMKLGREAPPLLSWNGGLQRQTSLAVQRIETRLRQLEIT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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