Pseudomonas sp. GM41(2012), PMI27_001038
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAACACATAACGCATGGTCAGTTGGCTGGAAGGCGCCAGACGTGCCAGGTACAGGGTCAGCGGATTGGTCTTTGAAGGGATTGAATCGGTAGCGGGTAA GTCAATCAAACGAAACGGCCTTAATGTGGAAACAGTTCATTAAACAACTAAGGATTGAAACATCCTTCATGTAAAGCGGGCCATTTCTGTAGGACTTTCT ACTAGAAATCTCGATGAACGGCACAAGCCTGAACAGTGGCTGTATGACATACAGATAAACGATTCGCCGACCGGGTTTTCATGTTCCTTTCACAAAATCG GGAATAACCTCAATGAATCCGGAATGACCCTGCTTTTGGTCCCAACCTGCCGAGCATGGCAGCAAAAGTCAACTGATGTGCTTTCTCATGCATTTGAAGT AACTGACTGATGCAGCTTTTGTTTTATCGTCTAAGCTTGCACTGGATCCAATTTTTTTTTAGCCTCACAGGCTATTCGCTCTTCAGCCCCCGAGGTGTCC
|
|
| DNA Sequence for Gene |
>PMI27_001038
ATGAGTCAGGCTTTCCTCCCCTTCTCCCGCCCCAGTATCGGCGATGAAGAAATTGCCGCCGTAGAGCAAGTATTGCGCTCCGGCTGGATCACTACCGGGC CGAAAAACCAGGAACTGGAAGAGCAATTCGCCAACTACGTGGGATGCCGTCATGCCGTGGCACTGTCCTCCGCCACCGGCGGGATGCACATCACGTTACT GGCATTGGGCATTGGTCCTGGCGACGAGGTCATTACGCCGTCCCAGACGTGGGTATCCACCGCCAACATGATCTGCCTGCTGGGCGCGACACCGGTGTTC GTCGACGTTGATCGCGACACGCTGATGAGTGACCTGGCAAGCATCGAAGCCGCGATCACGCCGCGCACCAAAGCCATCATTCCGGTGCACTACGCCGGCG CCGCGTTCGATCTCGATCCGCTTTATGCGTTGGCCGACAAACACGGCATCCCGGTCATCGAAGATGCCGCTCATGCAGCAGGCACCTTCTACAAAGGTCG GCATGTCGGCGCGAAAGGCACCGCGATCTTTTCCTTCCACGCGATCAAGAACATGACCTGCGCCGAGGGCGCCATGTTCGTCAGTGACGATGAGGCCCTG GCCAGTCGTGTGCGCATGCTCAAGTTTCACGGCCTTGGCGTCGACGCCTATGACCGCATGACGCACGGCCGCAAACCCCAGGCCCAGGTCATGGAGCCCG GCTTCAAGTACAACCTGGCCGACATCAACGCCGCCATCGCCCTGGTGCAGCTGGAGCGCCTGGACCAGATCAACGCCAAGCGTACGGAACTGGCCGGCGC CTACCTGCAACGCCTCGAAGGCTCAAAAGTGCAGCCATTGGCGATTCCGGCGTACCCGCAACAGCACGCCTGGCACCTGTTCATCCTGCGCATCGACACC GAGCGCTGCGGGCTGGACCGTGAAGCATTCATGAAGGCCCTGCAAGCACAGAACATCGGCACCGGCATTCACTTCATCGCCACGCACCTGCACACCTACT ACCGCCAACGCTTCCCCAACATCTATCTGCCCAACACCGAATGGAACTCGGCACGGCTGTGCTCAATTCCATTGTTCCCCGACATGACCCTCGATGACGT CGATCGTGTGGTCGGTGCTATTGAAAACGTTATGGACTCAAGCCTGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AACCTTACCCAATCCGTTGCGTGTCGATCGTCATCCCGGTCTACAACGAGCAAGACAGCCTGCCCGAGTTGCTCCGGCGCACCGAAGCGGCGTGTCAGCA ATTGCACCATGACTACGAGATTGTATTGGTCGATGACGGCAGTCGCGATGACTCGGCGCAGATCCTCGAAGCTGCCGCCAATCGCGAGGGCAGCCCGGTG GTGGCGGTCATTCTCAACCGCAACTACGGCCAGCACGCGGCAATCATGGCCGGTTTCGAGCAGTGCAAGGGCGATGTGGTCATCACCCTCGACGCCGACC TGCAAAACCCTCCCGAAGAAATCCCGCGGTTGGTGGCTAAGGCCGAGCTGGGTTATGACGTGGTCGCCACCGTGCGCAACAACCGTCAGGACTCGGCGCT GCGCCGCTGGCCTTCGAAGCTGATCAACCTGGCCGTGCAGCGCTCCACCGGCGTCGCCATGACTGACTACGGCTGCATGCTCCGCGCTTACCGGCGAACC
|
|
| Amino Acid Sequence |
>UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase
MSQAFLPFSRPSIGDEEIAAVEQVLRSGWITTGPKNQELEEQFANYVGCRHAVALSSATGGMHITLLALGIGPGDEVITPSQTWVSTANMICLLGATPVF VDVDRDTLMSDLASIEAAITPRTKAIIPVHYAGAAFDLDPLYALADKHGIPVIEDAAHAAGTFYKGRHVGAKGTAIFSFHAIKNMTCAEGAMFVSDDEAL ASRVRMLKFHGLGVDAYDRMTHGRKPQAQVMEPGFKYNLADINAAIALVQLERLDQINAKRTELAGAYLQRLEGSKVQPLAIPAYPQQHAWHLFILRIDT ERCGLDREAFMKALQAQNIGTGIHFIATHLHTYYRQRFPNIYLPNTEWNSARLCSIPLFPDMTLDDVDRVVGAIENVMDSSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|