Pseudomonas sp. GM41(2012), PMI27_000771
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGACAGGGGGATATCCAGGTCCAGCAAGTGGCTGTGCACGCCGCGCACGCCAAGGCTACGGTCGCTTTCGGCGGCGGTCAGCAAGGCGTCGATGACTTT GAGGCGGATCAGACTGGTTCGCAGACCATAGCTTTTGAGCAGCAGCCTGATCCGCTCGTTGCCATTGCGCTCGTTGCGCTGACTGAAAACACCTGAGCCC ATGGCAGAGCCCTTTGGCGCATTGCTACCGTCCGTTGGCAGTTGCGAGTTGTACATGCAAAAACTCCTTTTCCGAGCCGGCCAGGAAATGTGATGGGTGC TCTCACTCAATAAGACGTATGAGCAAGGCGAATAATGAAGCCCCGAATGTAGAAATTTTGTCGCCATCACGTCAGCGGCCTGTGAGATGCCCGTGAAAAG CGCCTTTCACAGCCTAAATTTTTGTCCTTTGTTTCGTTCCTAGGGGAAGGCGCTGTGCGTGTATGACGCAGGGTGTTTGTCTTTTCGATCAGGAGCGAGC
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| DNA Sequence for Gene |
>PMI27_000771
GTGATTATTTCCAGGCAGTTAACCCGGTTGAGCCTTGCAGGCGTGTTGGTGGGCTTGAGTCTTGCGGCAAACGCACGCAGTCAGCCGGAGCAGGCGAGCG CCGACATTCGCCGGACCAGTTTCGGCGTGCCGCATATCCGTGCCGACAACGAGCGCGGGCTCGGTTATGGCATTGGTTACGCCTACGCTCAGGACAACCT GTGCCTGCTGGCCAATGAGATCACTACTGTGAACGGCGAACGTTCACGCTATTTCGGCCCGGATCAGTTCACGGTCGAAGAACGCGAAAACCTGGTCAGC GATCTGTTTTTCAATTGGCTGAACACGCCACAGGCCGTCGAGGGTTTCTGGCAGGCGCAAACCCCGGCAGTGCGCGATCTCATCGAAGGGTATGTGTCGG GCTTTAACCGTTCGCTGACAGAGCGTCGGGCGCAGGGTTTACCGCAGCAGTGTCAGGGCGACTGGGTACGCGAGATTACCGCCCAGGACCTGGTCAAGTT GACGCGACGCCTGCTGGTCGAAGGCGGAGTAGGGCAGTTTGCCGAAGCCCTGGCCGGCGCGACGCCACCCAAGGCCGTTACTCAGGTGGCAGGCGATCCC TTGTCGTTCCAGGTGGCTGCCTCGCGCATGCAACGGTTTGCCCTGGACCGCGGCAGCAACGCCGTGGCGGTCGGCAGTGAACGTTCGTTCAATGGCCGGG GAATGTTGCTGGCCAATCCGCATTTCCCTTGGGTCGGCGGGATGCGTTTCTATCAAATGCACCTGACCATTCCCGGCAAGCTGGACGTCATGGGCGCGGC GCTGCCGGGGCTGCCGATGATCAACATCGGTTTCAACCAGCACCTGGCGTGGACCCACACTGTGGACTCGTCCAAGCATTTCACCTTGTATCGCCTGCAA CTCGATCCCAAGGATTCGACCCGTTATCTGCTCGACGGCAAGTCATTGCCAATGAAGAAACAGACCCTGACCGTGAACGTGAAACAACCGGATGGCCAGA CCAGACCGGTTTCTCATGTGGTCTACAGTTCGCAGTTCGGTCCGATCGTGCAATGGCCCGGAAAGCTCGACTGGGACAACCAGTTCGCCTACAGCTTGCG CGACGCGAATCTGGATAACGACCGGGTCTTGCAGCAGTGGTATGCAATGAACCGCGCGGTCAGCCTCAAGGACTTTCAGGCCTCGGTGCACAAGATCCAG GGGATCCCGTGGGTCAACACCCTGGCGACGGATGATCAGGGGCAGACGCTGTACATGAACCTCTCGGTCGTGCCGAACGTCAGTGCCGACAAACTGGCCC GGTGCAGTGATCCGCGGGCCGGGTTGCAGATGATCGTCCTCGACGGTTCCAACAGCGAGTGTGCCTGGGACATCGACCCGACGGCTGCACAAAAAGGCAT TTTTGCGGCAGACAAGTTGCCGCAGCTGTTGCGCAAGGATTTTGTGCAGCACTCCAACGATTCGGCCTGGATGGCCAACCCGGCGCAACCGCTTACCGGT TTTTCGCCCCTGATCAGCCAGGATGGCCAGCCATTGGGGCTGCGCTCGCGTTTTGCGCTGGATCGCCTGAACACGTTGAACAAGGCCGGCCCGATAGCCG CGACGGATCTGCAACACATGGTGATGGACGATCAGGTGTATCAGGCGGCACAAGTGATGCCGGACCTGCTGCAGTTCTGTACGGCGGCACCGGGGACCGA TGCGCCAGCGCTCACGCCGCTGTGTGCCAGTCTCAAGGCCTGGGATCGCAGTGCGAATCTGGACAGTGGTCTGGGGTTTGTGCATTTCCAGAATGTCATG GCGTCGCTAGAGGAAACGCCTGATCTGTGGCGTGTGGCGTTCGATCCGAAAGACCCGCAACACACGCCGCGTGGCCTGGCAGTGGATCGCGTGGACGTCG CAAAGGCGGTTCGCGAAGCGATGCTGGCGTCGGTCGCGCAGATCAACAAGATGGGGCTTACGGCCGATAGCCGCTGGGGTGATATCCAGGTCGTCAGCAG CGGCGGCCAGCAGACGCCGATTCACGGTGGACCTGGCTCTCTTGGAATTTATAACGCCATTCAGAGCGTGCCGAGAACCGACGGTAAACTCGAGGTCGTC AGCGGTACCAGCTATTTGCAGGTGGTGACCTTCGATGACAAGGGGCCGCAGGCCCAGGGGCTGCTGGCATTCTCGCTCTCCAGTGACCCGGCCTCCAGGT ACTCCAGAGATCAGACCGTGGCATTTTCCAGGAAGCAGTTGAGTGTGTTGCCGTTCACCGAACAGCAGATCACGTCCGATCCGCAGTACCAGGTTCAGAC GATCCGCGAACAGGATAAAAAAGCCGGGAAGGTGGCCGCAGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCTGAAGATATTTGAACCGGGAAATGAAGGCCGCACCCCGCAAAGGGTCGCGGCCTTCAGCTTTTCGGGGCTTGTTGCGGAATGGAGTTGAGGACCGGA TTGCCATCCTTGTTGCGGGTCAGGTAGACCGGCAATACCTTGGGCAGGGAAGCCACCAGGTTGTTGAGCTCTTTGATGTTGTAGATGCCGCCGATGCGAA TCGAGCCGGTACTGTGGTCGGCCACCATCACCGGTTTGCTCAAGTAGCGATTGATCAATGGCAATGCGTCGGTCAGCGCCAGGTCATCGAGCACCAGTTT TCCGCTGCGCCAGGCCAGTGAGTTTTCATTGTCGTAGGTCTGACTGATCCGGGGAGTGAAGTCGCCGCGTCTATAGCTCGCCTGCATTGCTGGCTCGAGG TGCAAACCGTCACCCGCAACGGCGTCATTACTGCTCACCAGCACCGAACCTTCTATCAGGTTCACCCGGACCTGATCTTCATACATCCAGACGTTGAATT
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| Amino Acid Sequence |
>acyl-homoserine lactone acylase subunit beta
MIISRQLTRLSLAGVLVGLSLAANARSQPEQASADIRRTSFGVPHIRADNERGLGYGIGYAYAQDNLCLLANEITTVNGERSRYFGPDQFTVEERENLVS DLFFNWLNTPQAVEGFWQAQTPAVRDLIEGYVSGFNRSLTERRAQGLPQQCQGDWVREITAQDLVKLTRRLLVEGGVGQFAEALAGATPPKAVTQVAGDP LSFQVAASRMQRFALDRGSNAVAVGSERSFNGRGMLLANPHFPWVGGMRFYQMHLTIPGKLDVMGAALPGLPMINIGFNQHLAWTHTVDSSKHFTLYRLQ LDPKDSTRYLLDGKSLPMKKQTLTVNVKQPDGQTRPVSHVVYSSQFGPIVQWPGKLDWDNQFAYSLRDANLDNDRVLQQWYAMNRAVSLKDFQASVHKIQ GIPWVNTLATDDQGQTLYMNLSVVPNVSADKLARCSDPRAGLQMIVLDGSNSECAWDIDPTAAQKGIFAADKLPQLLRKDFVQHSNDSAWMANPAQPLTG FSPLISQDGQPLGLRSRFALDRLNTLNKAGPIAATDLQHMVMDDQVYQAAQVMPDLLQFCTAAPGTDAPALTPLCASLKAWDRSANLDSGLGFVHFQNVM ASLEETPDLWRVAFDPKDPQHTPRGLAVDRVDVAKAVREAMLASVAQINKMGLTADSRWGDIQVVSSGGQQTPIHGGPGSLGIYNAIQSVPRTDGKLEVV SGTSYLQVVTFDDKGPQAQGLLAFSLSSDPASRYSRDQTVAFSRKQLSVLPFTEQQITSDPQYQVQTIREQDKKAGKVAAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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