Pseudomonas sp. GM41(2012), PMI27_000423
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTGATACGCAGCTCTATCGACGCTATCCGATTATTGCCGTGGTTCGCGATGACCATCCCTGGGCCCGGCAGAAAGAGGTGTACGTCGAGCAGATCAGCG ACGAAAAGTGGGTCCTGAGGGAAAAAAGCTCACGCACCCGGCAACTGGTGGAAGAAAGCTGCAAGCGTCTTGGCGTCGATCTGAACTGTGTCATGCAATT GAACAGTCGCGAGGCGATTGTCCACGCCATCGCCAAGGGCATCGGTATCGGTTTCGTGTCGGCCGTCGAGTACGCCGAAACGCCAGGCACCAAGCCGATC ACCTTTGTCGATCACCCGTTTTCAATCGACTACCACCTGTGCTGCCTGGGTATTCGCAGGAACCGGCCGATGATCGCGGAGTTGTTCGACTCCAGTCCCA TACCGACCACCTGATTCCGTAACGCGTTTCAACAATCAATAGGCTTACCTCCTGGTGACAAGAGGGACGGCCTTCCCCTACCCAAAATTGGAGATTCACC
|
|
| DNA Sequence for Gene |
>PMI27_000423
ATGCACTATAAACAACCTACTCAACTGCAAGCCGTGGTCCTGGACTGGGCGGGCACCGTCGTTGATTTCGGTTCCTTCGCACCGACTCAAATCTTCGTCG AGGCGTTCGGCGAGTTCGGCGTCGCCGTCTCCCTGGAAGAGGCCCGCGGTCCGATGGGCATGGGCAAGTGGGATCATATCCGCACGCTGTGCAACCAGCC ACAGATCGCCGAACGCTACCGTGCGGCCTTCGATCGCCTGCCGACCGATGAGGATGTCACCGCGCTTTACGAGCGCTTCATGCCGCTGCAGATCGAGAAA ATCGCCCTGCACTCCGCGCTGATTCCCGGTGCCCTGGACGCCATCGATGCGTTGCGCGACAAGGGTCTGAAAATCGGTTCGTGCTCCGGTTATCCGGCAG TCGTGATGGAGAAAGTTGTCGAGCTGGCGCGCAAAAACGGCTACGTCGCCGACCACGTCGTAGCGACCGACGAAGTGCCCAATGGTCGTCCGCACCCGGC TCAGGCGTTGGCCAATGTGATTGCTTTGGGGATCAGCGATGTCGCCGCCTGCGTGAAGGTCGACGACACCTGGCCCGGCATTCTCGAAGGTCGTAGCGCA GGCATGTGGACCGTCGCACTGACCTGTTCCGGCAACGCGCTGGGCTTGACCTACGATCAGTTCAAGGCCCTGTCCTCTGACAAACTGGCCGAAGAACGTG CCCGCATTACCAAGATGTTCGAAGGTTCTCGCCCGCACTATCTGATCGACACCATCGTCGAGTTGCCGGCCGTCATCGAAGACATCAATGCCCGCCTGGC GCGTGGTGAAACCCCTCAAGGTTGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGCCACCTGTTGAAACTGACAGTGGCCGTCCAAGGACGGCCACAACTGAATCAATCGCGCGTATCGCATGGGTCATGTCTGTGGACCCACTGCTACCCCC TGTACCACGCCGCGTTCGGCGGCTTCGATGATCGACCACCCTCTTCGTTCGCCGACCGTAGATGCCTGAAATAGACGAAGAGTTACCGCTCTGGATGCAT TGTTCAAATCGGTTGATTCGAGGCTTGTATCGGCCAAATCGATACGCGGCACTAATAAGCTCAGCTTATTTATGAAATACAATAAAACGATTTTTCTTAT TTCTAATTCATTGTTTATATCCACCCATGCATCACTCCTCACCACAAAAACAATACCGCCGGAGAAGATCATGACCAAAGCCGAATTCCCGACCACTCAA CCGCTGGCAACTCCAGCTTTGGGTGAACCCTACCTGCTGACCCCAGGCCCGCTCACCACCTCCAAAGCCACCAAGGAAGCGATGCTTCGCGACTGGGGCT
|
|
| Amino Acid Sequence |
>phosphonoacetaldehyde hydrolase
MHYKQPTQLQAVVLDWAGTVVDFGSFAPTQIFVEAFGEFGVAVSLEEARGPMGMGKWDHIRTLCNQPQIAERYRAAFDRLPTDEDVTALYERFMPLQIEK IALHSALIPGALDAIDALRDKGLKIGSCSGYPAVVMEKVVELARKNGYVADHVVATDEVPNGRPHPAQALANVIALGISDVAACVKVDDTWPGILEGRSA GMWTVALTCSGNALGLTYDQFKALSSDKLAEERARITKMFEGSRPHYLIDTIVELPAVIEDINARLARGETPQGC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|