Pseudomonas sp. GM41(2012), PMI27_003579
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGGTGTTGCTCAACGGCTAAAGACTGACCCAGATCCCTTGCTCGTCTTCGCGGCAGGCGACGGTGGTCAGGGACTGACCGGCGCAAGGGCCGGCGACGC ATTCGCCGTCTTCGATCAGAAACAGTGCGCCGTGGGTCGCGCACTGGATCAGGCTGTTGCTGGGGTCGAGAAACTGGTCGGGCTTCCATTCCAGTCCCAC GCCACGGTGCGGGCAGCGATTGATGTAGACGTAAACCTGGCCGCCACGGCGCACGGCAAAGAGCTTCTGGCCGTCGATGTCGAAACCGCGACTGCTGGCA TCGGCCAGCTCAACGCCTGCACAAAGAAACTTCATGTCTATCCTCAAGTCCGGCGGCTCGTGACTGGATATGTCCGAGCTTGACGTTCAAATGCAAACAA TTATCAAATGGCCGCCTTGCCCTTCGGTTACAGATGCCAGGCGCCTAGGATACGTGGCCTGTCATTTCTATGCCCGGGAAAACCCTAAAGGAAGCTGTTT
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| DNA Sequence for Gene |
>PMI27_003579
ATGCGCCTGAGTACCCGCGTTGCTGCGCTCTGTGTCGGACTCCTCGTCAGCCACCACGCCGCAGCGGCCGAGTCGCCACAACGTTGGGTCAGTGCCGGGG GAGCTTTATCGGAATGGATCAGCGCGCTGGGCGGTGAATCGAAACTGGTCGGTGTCGACACCACCAGCCAGCACCCGGAATCGCTCAAGGCATTGCCGAG CATCGGGTATCAGCGGCAATTGTCGGCGGAGGGCATCTTGAGCTTACGCCCGCAGATACTGGTTGGCACCGAAGAAACGGGACCGCCACCTGTACTTTCG CAGGTTCGCAGTGCGGGTGTGCAGGTCGAGCTGTTCTCGGCCCAGCCGGACCTGCCGACGTTGCAGGGCAATTTGCAGCGTCTGGGCAAGTTGCTTGGCG CTGACGATCAGGCCTCACAGCTGTTCCAGGCTTATCAACAGCAACTCGATCAGCAAAAGATCCGGGTCACTCGGGCGCAGTTGAAGGAAAAATCGCCGGG CGTGCTGTTGTTGCTTGGCCACGCGGGCGGCAAACCGCTCATCGCCGGCAAGGACACCGCCGCCGATTGGTTGCTGCAACAGGCCGGCGGACACAATCTG GCCACGCATACCGGCTACAAACCCTTTTCTGTCGAATCCCTGGTCAGCCTGGATCCTGAGGTGCTGGTGTTTGCTGATCGCGCACTGACCGGCGATGCAG CCCGTGCGGCGTTGTTCAAGGAGAATCCGATCCTGTCCTCGACCCGCGCGGCCAAGGACGGGCGAGTCATAGAGCTTGATCCGACGTTGTTGGTCGGGGG CTTGGGGCCGCGGCTACCCGATGCGATGAAAAAACTGTCTGACGCCTTTTACCCCGATTCGGCCGGCCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCATCCTGGTTAAACCCCGCGCTTTGTTCATTGGTCTGATCCTGCTGTGTTTGCTGGCCATCTGGTTGTCATTGGCGCTTGGACCGGTGAGCTTGCCGTT GTTCGACACCTTGCGCGCAGCCCTGCGGCTGGTGGGGGTACCGATCGCGCCCGACGGGCTGGAGCAGGCGGGGCTGATCCTCGGGCAGATTCGTTTGCCG CGAACCTTGTTGGGTTTGGCCGTGGGAGGGGTGTTGGCATTGTCCGGCGTGGCGATGCAGGGGTTGTTTCGTAATCCTCTGGCCGATCCGGGGCTGGTCG GCGTCTCCAGCGGTGCGGCATTGGGCGCGGCGATTGCGATCGTCGGTGGTTCTGTGTTCGGCGGTCTGCCTGAATCCTTCGGGCCGTATCTGTTATCGCT GTGCGCGTTTCTCGGCGGGCTCGGCGTGACCGCGTTGGTGTATCGACTGGGCCGGCGCAACGGGCAGACCAATGTCGCGACCATGCTGCTGGCCGGTATT
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| Amino Acid Sequence |
>ABC-type hemin transport system, periplasmic component
MRLSTRVAALCVGLLVSHHAAAAESPQRWVSAGGALSEWISALGGESKLVGVDTTSQHPESLKALPSIGYQRQLSAEGILSLRPQILVGTEETGPPPVLS QVRSAGVQVELFSAQPDLPTLQGNLQRLGKLLGADDQASQLFQAYQQQLDQQKIRVTRAQLKEKSPGVLLLLGHAGGKPLIAGKDTAADWLLQQAGGHNL ATHTGYKPFSVESLVSLDPEVLVFADRALTGDAARAALFKENPILSSTRAAKDGRVIELDPTLLVGGLGPRLPDAMKKLSDAFYPDSAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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