Pseudomonas sp. GM41(2012), PMI27_003188
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCCCTCAAAGTGAGCTCGTTGGTGCGTTGTATCGCGACCATCGCGGTTGGCTGTTGGCCTGGCTTCGACGCAATGTGGCCTGTCCGCAACGGGCCGAAG ACCTGAGTCAGGACACTTTCGTGCGTTTGCTGGGTCGTGAAGAACTGAAGGAGCCGCGTGAACCGCGAGCGTTTCTGGTGGCGATTGCCAAGGGTCTGCT GTTCGACTATTTCCGCCGCGCCGCGCTGGAACAGGCCTACCTCACCGAACTGATGCTGATCCCCGCCGGTGAACAACCGTCGGTGGAGGAACAGCAGCTG ATCCTCGAAGACCTCAAAGCCATCGACCGCCTGCTCGGCAAGCTCTCAAGCAAGGCCCGGGCAGCGTTTCTGTATAACCGTCTCGACGGTCTCGGCCACG CCGAAATCGCCCAGCGCCTGGGCGTGTCAGTGCCGCGGGTGCGTCAGTATCTGGCCCAAGGCATTCGTCAGTGCTACATCGCGTTGTACGGTGAGCCGGT
|
|
| DNA Sequence for Gene |
>PMI27_003188
ATGAGTCCGGTCAGCTCCAAGCCCGTCTCCGCGCAGGTGCTGGATGCGGCGATTGCCTGGCAGTTGTCCCTGGACTCCGGCAACCCGGTGGAGCGCGAAG AGTTCGCCAAATGGCATGCTGCCCACGAAGAGCATGCGCGGGCCTGGCGCCAATTGGGCATGCTCGACCAGCGCTTCAGCGTTGCCAGCGGCCCGGCACG TACCGCGTTACTGCAATCGCGCGAAAGCATTCGCCGGCGCGTGCGCAAACTCGGCAGCGGCATGGCCAGCATCGTCGCGGTGATCGGGTTGGCGTTGTTC GCCGGTGATCGTTATCTGCCGATCGACTATTGGCTGGCCGACCAGCGCACCGCCACCGGTGAGCAACGCACCCTGCGCCTGACTGACGGCACGCTGATCA ACCTCAACACCCACAGTGCCGTGGATGTGCGTTTCGATGAAAAACAACGGCTGATCATTCTCCAGGAAGGGGAAATCCTCGTCGAAACCGGTCATGGCGA CGCCCGGCCGTTTATCGTCGAAACCCGCGAAGGCAGCATGCGTGCACTGGGGACAAGGTTCCTGGTCAAGCGTGAAGAAGAAGGTACGCGCCTGAGCGTG CTGAAATCGGCGGTGGCGGCCCATCCCGAGTCAAGTCCTGAAGAGCAGATTCTGCGTGAAGGCCAGCAAGTCCTGATGCGCAGCAATGGCCTCGGGCCGA TCGTCGCGCTCAACCTAGGCGCCGATGCCTGGACCCGCGGCATGCTGGTGGTGGACAACACACGGCTGGAAGACCTGGTGCATGAACTCGGTCGTTATCG ACGCGGGTATCTTGGCGTTGCGCCAGAAATCGCCGACCTGCGCATCACTGGCAGCTTCCCGCTGCACGACACCGATCTGGCCCTGAACGCCCTGCTGCCG ACCCTGCCGGTGCAGATCGAACAGCACACGCCGTGGTGGGTGACGGTGGCGGCAAAAACTGACGCAAAGCCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTTTGGCTGTGCCTGACCCGACATCTTCGCGGGCAAGCCTCGCTCCTACAGATTTGTGCGTTATTCGAGAACGACACAAACCCTGTAGGAGCGAGGCTTG CCCGCGAAGAGGCCATCAGCTCCACCACAAATGATGAATCGAAATTATTTTCAATCAGCCCTATCACTTTTGAATTCTCGTCCGGCACCTAGGCAATTGA GAAATATTTCCATTCAGGAGCCGCTGTATGTCCCGTTCGCTCGACACCGTGTTGCGCCCCAGTTTGCTGGCGATTGCCATTGCCCTTTGTGCCCCTCTGG CCAGCAGTCAGCTGATTGCCGCTGAACAGGCGTCCAGCGTTCGCGCCTACAACCTGCCGGCCGCGCCATTGGCCAGCACCCTGAACCAGATCGCCAGCCA GGCGGGTCTGGCGCTGTCGTTGAATCCATCGCTGGCGGCAGGCAAGACCTCGGCGCCGGTCAAAGGCCAGTTCGACGCAGCCAACGCCCTGCGCGAAGCC
|
|
| Amino Acid Sequence |
>amino acid ABC transporter substrate-binding protein
MSPVSSKPVSAQVLDAAIAWQLSLDSGNPVEREEFAKWHAAHEEHARAWRQLGMLDQRFSVASGPARTALLQSRESIRRRVRKLGSGMASIVAVIGLALF AGDRYLPIDYWLADQRTATGEQRTLRLTDGTLINLNTHSAVDVRFDEKQRLIILQEGEILVETGHGDARPFIVETREGSMRALGTRFLVKREEEGTRLSV LKSAVAAHPESSPEEQILREGQQVLMRSNGLGPIVALNLGADAWTRGMLVVDNTRLEDLVHELGRYRRGYLGVAPEIADLRITGSFPLHDTDLALNALLP TLPVQIEQHTPWWVTVAAKTDAKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|