Pseudomonas sp. GM41(2012), PMI27_003076
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTTTCGCGGTGGTCGCCGATGAAGTTCAGCGGTTGGCCGAGCGCTCGTCCGCCGCCACCCGGCAGATCGAAACCCTGGTGCGGGCGATTCAGACCGAC ACCAACGAAGCGGTGATTTCCATGGAACAGACCACCACCGAAGTGGTGCGTGGCGCTCGTCTGGCGCAGGATGCCGGAGTGGCCCTGGAAGAAATCGAAG GTGTGTCGAAGACCCTCGCCGCGTTGATCCAGAGTATTTCCAACGCCGCCCAGCAACAGACGTCCTCGGCCGGTCAGATTTCCCTGACGATGAACGTGAT CCAGCAGATCACCACGCAGACCTCGTCCGGCTCCACCGCCACCGCCGAGAGCATTGGCAACCTGGCGAAAATGGCCAGCCAGCTGCGGCGTTCGGTGTCC GGTTTCACCTTGCCGGCCGCCAAGGCTGAGGCTGCGGATAAAGTGTGAAACGCCTGCGAGCGAATGCATTTTTTGAGTAGAGCAGTGATTTGGAGTGGTT
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| DNA Sequence for Gene |
>PMI27_003076
ATGGGTGATCGGCACGACTATGTGGCCCTCGAGTGGGTCAAAGGCGAGATTGCCGAAACGCTGAAAGTGGCTCACCAGGCGATTGAAACGTTGCTTGATG ACCCGCAGGCGACGCACGCCCTCAGCGAATGCCTGGCGTGCATCCATCAGGTTCACGGCAGTTTGCAGATGGTCGAATTCTACGGCGCGGCGCTGCTCGC CGAAGAGATGGAACATCTGACCACCGCCTTGCAACAGAACCGCGTCAGTCATCGCGATGAGACGCTCCACCTGTTGCTGCAAGCCCTTGGGCAGCTGCCG ATTTACCTCGACCGGGTGCAAGGTGCGCGCCGCGACCTGCCGCTGGTGGTGTTGCCACTGATCAACGATCTGCGCAGCGCCCGTGGCGAAAGCCTGTTGT CGGAAACCAGCCTGTTCAGCCCGCAATTGCCGGACCTGCCGCCACTGGACGAAGAGTCGCTGGCGCTGCTGGAGCCGGCGGATTTACCGAACGTGCTGCG CAAGTTGCGGCAAATGTTGCAGATGGCCCTGGTCGGGTTACTGCGTGAACAGGACGGCGAAACCAATCTCGGTTACCTGACCAAGGTTTTTGCGCGCCTC GAAGGGCTGTGCGGCAACGCGCCCTTGAGCCCATTGTGGCAAGTCGCCTCGGCGCTGGTCGAAGGCATGCGCGACGGCTCGATTGCCAACAGCCCGGCGT TGCGCAGTCTGTTCAAGGAGGCCGACAAAGAACTGAAGCGCCTGCTCGAACAGGGCATGCCCGGCATCAATCAGCCGGCGCCGCTAGAGTTGCTCAAGAG TTTGCTGTTCTACATTGCCAAGACCGAACATCCCACCGGGCAGATGCTGACCATGAAAGATCGCTACGGACTGGACGACGCGCTGCCTGACAGCGCAATG GTCGACGAAGAACGAGCACGGCTGGCCGGTCCCGACCGCGATGCCATGCGCTCGGTGTTGGCCGCTTTGTGTGAAGAGCTGGTGCGGGTCAAGGAACGCC TGGACCTGTTCGTGCGCAGCGACCGCCAACACACCTCGGACCTCGAAAGCCTGCTGGCGCCCCTGCGGCAAATCGCCGACACCCTGGCGGTGCTCGGTTT CGGCCAGCCGCGCAAGGTCATCATCGATCAACTGGCGGTGGTGCTGAGCCTCGCCCAGGGCCAGCGTGAGCCCAACGACGCAATCCTGATGGACGTCGCC GGTGCCTTGCTCTACGTCGAAGCGACGCTGGCCGGCATGGTCGGCACCGTCGAGCCGGAAAGCCAGGAAGAAAGCCGCCTGCCGACCACCGACCTGACCC AGATCCATCAGATTGTGATCAAGGAAGCGCGCATCTGCCTGCAACAGGCCAAGGACATGATCGTCGACTACATCGACGCCGACTGGGACCGCCAGCATTT GCAGCCACTGCCGGCCCTGCTGACCCAAGTGCGCGGTGCGCTGGCGATGATTCCGTTGAGCCGTGCGGCGAGCCTGATCGAAACCTGCAACCACTTCATC CGCGAGCACCTGCTGCTGGATCCGGATCACCCCGGCTGGCAGGAACTGGACAGCCTGGCCGACGTCATCACCAGCATCGAGTACTACCTGGAGCGCCTCA GCGACGACCCCGAAGCGCCGGGCGAACAGTTGCTCGACGTCGCGGAAAAAAGCCTGGCCGCACTTGGCTTTTTCCCCAGCGAGCAGCAGGTGCCGGTGCT TGAAGATGTGCTCAGCCCGAGTGAAGCGCAGGTCATGCAGGATTTGCAGGAACTGGACGACCCTGAGACCGTCAAGTCACTGGCCGATGTATTGGCCAGC CCTGTGTCCTCCGTCAATCCGCCCGCCCTGACTATCCCCGGAAGCCTGTTGCCGCCGCCCACCGGTGAAGAGCCGGTGGACGATGAACTGCGGGAAGTGT TCCTCGAAGAGACCGATGAAGTCCTGGAAATCCTCCGGGAATACCTGCCGCGCTGGACGGCTAACCCCAACGATAAACCTGCCTTGAGTGAATTGCGTCG GGCATTCCACACCTTGAAAGGCAGTGGCCGAATGGTCCGCGCGTTGGTGTTGGGTGAACTGGCCTGGGCGGTGGAAAACTTGCTCAACCGCGTGCTGGAG CACAGCGTTGCGCCAGGGGCAGCGGTGCAACAATTGCTCCGCGATGCCCTGGACCTGCTGCCGAAGCTGGTGGCCGAATTTGCCGCCAATGCCCAGCGCC AATGCAACCAGGTCGACCAACTGGCTGCTCGCGCCCATGCCCTCGCCAAGGGCGATACGCCTGCCAGCGATGAAGATACCCAGGATGTGGCAGCCCTCGA TCCGCTGTTGCTGGAGATCTTCCGCAAGGAAGCCGAGACCCATCTCGCCAGCCTCAACCGTTTCCTCGATCAAGCCGCCGAGCACGTGCCGTTGCAGGCC AGCGACGAGTTGCAGCGGGCGCTGCACACCCTCAAGGGCAGCGCCTCCATGGCTGGCGTATTGCCGATTGCCGAGCTGGCGACGCCACTGGATCATCTGG CCCGGGAGTACAAGGCGCACCTGCTCGCCCTCGACCTGGACGAAGTCGAACTGCTGCTCGAAGCCGAAGGATTGTTCCGTCTCGGGTTGCGACAGCTCAA GACTGATCCACTGGCGGAGATTCCCGGCGCCCGCTCATTGATCGAGCGCACCCGGGCGTTGCTGGCCGAGCGGCTGGAAACGCTCCTGAGTGCACCGAAT ACCAGATTGCGCATCAAGCGTGATCCGCAACTGATCAACAACTTCCTCGCCCAAGGCATGGACATCCTGCTGGACGCCGAAAGCCTGTTGCAGCGCTGGC AGCAACATCCCGGTGAGCGTCAGGAACTCAGTGCGCTGCTGGACGAATTGACCACCCTCGGCGAAGGCGCGCACCTGGCGGATCTGCATCCGGTGGATGA ACTCTGCGAAGCCTTGCTCGACCTCTACGGCGCGGTGGAAGAAAGCAGCCTGGCGGTCAGCGAAGCGTTTTTCCATGAGGCGCAAAGTGCCCATGAAGCG CTGATCAATATGCTCGACGAACTGGCCGCCGGCCAGGAAGTCAGCCCGCAACCGGAACGTATTCGGGCCTTGCGCGGCTTGCTCGATGAGGGCCTGGATC CGTCGGCAATGGGGCTGATTCGCAGCGATGGCAGCCGCACATTGAGCATCCGGGAACTGGGCGACGCCACCGCCGAACTTGAAAACACACTACCCCCTGT GGGAGCGAGCCTGCTCGCGATGGACGTCAACGATGACGCATTATCGCAGGATAAACGCGGCGCCTATGAATCCATCGCGAGCAGGCTCGCTCCCACAAAG GATCATGAGCTGGACGACGAGATCGTTTCGATCTTCCTCGAAGAGGCGGTGGATATCCTCGAGAGCGCCGGCCAGGCTTTGCAGCGCTGGCTGGGCGACC CGGACAACGTTGCGCCGTTGTTGTCGTTGCAGCGAGATTTGCACACCCTCAAGGGGGGCGCGCGGATGGCCGAGGTCGAGCCGGTCGGTGAGCTGGCCCA TGAACTGGAAAGCCTTTACGAAGGTCTGGTGGACCGCCGTTACGCCTACAGCGAAGCTTTGGCGCACTTGCTGCAACACAGTCATGACCGGCTCGCGCAG CTGCTTGAACAGTTGCAGAACCAGCGGCCATTGGGCGATCCGGGTGAGATGATCGAGGCCATTCGCGAGTTTCGTCAGGGCAACGCCAGCGCTGTTGAAA CGGTCGAACCGGCACGGGCCGAGGACTCACCGAGTCATGATCCGGAGCTTCTGGAGATCTTCCTCGAGGAAGGTTTCGACATCATCGAAAACTCCGGCGC GGCGCTGGTGCGCTGGCAGGCTGAGCCGTCGAATCGTCAGGAAGTGGAAACCCTGCTGCGTGATTTGCACACCCTCAAGGGTGGCGCGCGGATGGTGGAA ATCGCGCCGATCGGCGACCTCGCCCATGAGCTGGAATTCCTCTACGAAGGCCTGTCCGCTGGCGTGTTGCAACCCACTGCCGCGTTGTTCGGCTTGTTGC AAAGCAGCCACGACCGACTGGCGCAAATGCTCGACGCGACCCGTGCCGGTCAGCCATTGCCGCCCGCCGATCAACTGATCGATGAGATCAAGAATTTCAG TCATCCGGTGGCGCCCGAAACACCGGCGCCGGTCCAGGTGCCTGCAACGCCGAAAATCGAGACGCCGGCACTGCAATCCGATGTCGGCGCGGACATGGTC AAGGTCTCGGCAGAACTGCTCGACGATCTGGTCAACCTGGCCGGCGAAACCTCGATCTTCCGTGGGCGGATCGAACAACAGGTCAACGATGCACGTGTGA CTCTGAGCGAAATGGAAACCACCATCGAGCGCATGCGCGACCAATTGCGCCGGCTCGACACCGAAACTCAGGGGCGGATTCTCAGCCGTCAGCAAGTCGA CGCCGAACGCCTGGGCTACGAAGAATTCGATCCGCTGGAAATGGACCGTCACTCGCAGTTGCAGCAACTGTCGCGCGCGCTGTTCGAATCCGCCTCCGAC TTGCTCGACCTCAAGGAAACCCTCGACCGACGCAATCAGGACGCGGAAAACCTGCTGCAACAACAGGGCCGCATCAACACCGAATTGCAGGAAGGCCTGA TGCGTACGCGCATGGTGCCGTTCGAGCGGATGCTGCCGCGCCTGAAGCGGATCGTCCGTCAGGTCTCCAGCGAACTGGGCAAGGACGTGGAATTCATCGT CGGCAATGCCGAAGGCGAGATGGACCGCAACGTCCTCGAACGCATGGCCGCGCCGCTGGAACACATGCTGCGCAACGCCGTGGATCATGGCCTGGAATCC GCCGAGGTGCGTATCGCGGCGGGTAAACCGGCTCAGGGGCGAATCACCCTCGACCTGTCGCGAGAGGGCGGCGACATCATTTTCGACATCCGCGACGACG GTGCCGGTGTGCCGTTGGACGCGGTGCGGAGTAAGGCGATCAAACGCGGGTTGCTGGCCCCGGACAGCGATATCAGCGACCGCGACGTGTTGCAATTCAT CCTGCAACCGGGGTTCTCCACCGCCGAGAAAATCACCCAGATTTCCGGACGCGGCGTCGGCATGGACGTGGTGCATGAAGAGGTCCGGCAGCTCGGCGGC AGCATGAGCATCGACTCTGTGCCGGGGCAGGGCGTGCACTTCCGGATTCGCCTGCCGTTTACCGTGTCGGTCAACCGGGCGCTGATGGTGCAGTGCTTTG ATGATCAGTACGCGATCCCGCTGAACACCATCGACGGCATCGTTCGCGTGCTGCCCAACGAACTTGAAGGGCATTACCGGCTCGATCCGCCGACCTACAA ATACGCCGGGCAAGACTATGAACTGTGCTACCTCGGCGAACTGCTGAAAACCAGCCAGCGTCCGAAACTGCTGGGCCAGAGCCTGCCGTTGCCGGTGTTG CTGGTGCAGTGCAACGAGCGGCACATCGCGGTGCAAGTCGACTCCATGGCTGGCACTCGCGAGATCGTGGTCAAAAGCCTCGGCCCGCAGTTTGCAGCGG TGCAGGGTTTGTCCGGGGCGACAATTCTCGGCGATGGGCGGGTGGTGCTGATTCTTGATTTGCTGGCGCCGATCCGCGCGATGCAGGCCCGTTTGCCGCA ACAGCCAGTGACTCAGGACGCGGAGGTCGAGCCGCATAAACCGCTGCTGGTGCTGGTGGTCGATGATTCGGTGACCGTGCGCAAGGTCACCAGCCGTCTG CTGGAACGCCACGGCATGAACGTGCTGACCGCCAAGGACGGGGTCGACGCCATGTTGCTGCTTGAAGAGCACATGCCTGACCTGATGCTGCTGGACATCG AAATGCCGCGCATGGACGGTTTTGAAGTCGCGACCCAGGTCCGCGCCGACGAACGTCTGCAGCACCTGCCGATCATCATGATCACCTCCCGCACCGGGCA GAAACACCGCGATCGCGCCATGGCCATCGGCGTCAACGACTACCTCGGCAAGCCGTACCAGGAATCGGTGCTGCTCGACAGCATCCACCTGTGGAGCAAA ACCCATGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACCGCACCAGCAACCTCACCGGCCTGCTGCTGCCCTTGGCTGACCGCAACCTGATCTTGCCCAACGTCGCTGTGGCGGAGCTTATTGATTACCAACCC AGCGCCTTCGACCTCGACACGCCGCCGTGGTACCTCGGGCGGGTCATGTGGCGGAACCGGCAGATTCCGTTGCTGAGTTTCGAGTCGGCGTGTGGGCAGA AAATCGTTATCGGTGAGCGAGCGCGGATCGTCATCCTCAATGCCCTTGGTGGGCGGCCCGATTTGAAATTCATCGCCTTGCTGGTGCAGGGGATTCCGCG GTCTTACAAGCTTGATAGTCAGTTGAGCTATGTGGATGTGCCGTTGTGCTCGCTGGAACAGGCGGCGGTGCAGGTGGGGGAGCAGGTGGCCAAGGTGCCG AATTTGTTGGCTCTGGAAGAACTGCTTGTGAATGCAAGTCTGGTCTGACCGGATCCCTGTGGCGAGGGGGCTTGCCCCCGTTCGGCTGCGTAGCAGTCGT
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| Amino Acid Sequence |
>sensor histidine kinase
MGDRHDYVALEWVKGEIAETLKVAHQAIETLLDDPQATHALSECLACIHQVHGSLQMVEFYGAALLAEEMEHLTTALQQNRVSHRDETLHLLLQALGQLP IYLDRVQGARRDLPLVVLPLINDLRSARGESLLSETSLFSPQLPDLPPLDEESLALLEPADLPNVLRKLRQMLQMALVGLLREQDGETNLGYLTKVFARL EGLCGNAPLSPLWQVASALVEGMRDGSIANSPALRSLFKEADKELKRLLEQGMPGINQPAPLELLKSLLFYIAKTEHPTGQMLTMKDRYGLDDALPDSAM VDEERARLAGPDRDAMRSVLAALCEELVRVKERLDLFVRSDRQHTSDLESLLAPLRQIADTLAVLGFGQPRKVIIDQLAVVLSLAQGQREPNDAILMDVA GALLYVEATLAGMVGTVEPESQEESRLPTTDLTQIHQIVIKEARICLQQAKDMIVDYIDADWDRQHLQPLPALLTQVRGALAMIPLSRAASLIETCNHFI REHLLLDPDHPGWQELDSLADVITSIEYYLERLSDDPEAPGEQLLDVAEKSLAALGFFPSEQQVPVLEDVLSPSEAQVMQDLQELDDPETVKSLADVLAS PVSSVNPPALTIPGSLLPPPTGEEPVDDELREVFLEETDEVLEILREYLPRWTANPNDKPALSELRRAFHTLKGSGRMVRALVLGELAWAVENLLNRVLE HSVAPGAAVQQLLRDALDLLPKLVAEFAANAQRQCNQVDQLAARAHALAKGDTPASDEDTQDVAALDPLLLEIFRKEAETHLASLNRFLDQAAEHVPLQA SDELQRALHTLKGSASMAGVLPIAELATPLDHLAREYKAHLLALDLDEVELLLEAEGLFRLGLRQLKTDPLAEIPGARSLIERTRALLAERLETLLSAPN TRLRIKRDPQLINNFLAQGMDILLDAESLLQRWQQHPGERQELSALLDELTTLGEGAHLADLHPVDELCEALLDLYGAVEESSLAVSEAFFHEAQSAHEA LINMLDELAAGQEVSPQPERIRALRGLLDEGLDPSAMGLIRSDGSRTLSIRELGDATAELENTLPPVGASLLAMDVNDDALSQDKRGAYESIASRLAPTK DHELDDEIVSIFLEEAVDILESAGQALQRWLGDPDNVAPLLSLQRDLHTLKGGARMAEVEPVGELAHELESLYEGLVDRRYAYSEALAHLLQHSHDRLAQ LLEQLQNQRPLGDPGEMIEAIREFRQGNASAVETVEPARAEDSPSHDPELLEIFLEEGFDIIENSGAALVRWQAEPSNRQEVETLLRDLHTLKGGARMVE IAPIGDLAHELEFLYEGLSAGVLQPTAALFGLLQSSHDRLAQMLDATRAGQPLPPADQLIDEIKNFSHPVAPETPAPVQVPATPKIETPALQSDVGADMV KVSAELLDDLVNLAGETSIFRGRIEQQVNDARVTLSEMETTIERMRDQLRRLDTETQGRILSRQQVDAERLGYEEFDPLEMDRHSQLQQLSRALFESASD LLDLKETLDRRNQDAENLLQQQGRINTELQEGLMRTRMVPFERMLPRLKRIVRQVSSELGKDVEFIVGNAEGEMDRNVLERMAAPLEHMLRNAVDHGLES AEVRIAAGKPAQGRITLDLSREGGDIIFDIRDDGAGVPLDAVRSKAIKRGLLAPDSDISDRDVLQFILQPGFSTAEKITQISGRGVGMDVVHEEVRQLGG SMSIDSVPGQGVHFRIRLPFTVSVNRALMVQCFDDQYAIPLNTIDGIVRVLPNELEGHYRLDPPTYKYAGQDYELCYLGELLKTSQRPKLLGQSLPLPVL LVQCNERHIAVQVDSMAGTREIVVKSLGPQFAAVQGLSGATILGDGRVVLILDLLAPIRAMQARLPQQPVTQDAEVEPHKPLLVLVVDDSVTVRKVTSRL LERHGMNVLTAKDGVDAMLLLEEHMPDLMLLDIEMPRMDGFEVATQVRADERLQHLPIIMITSRTGQKHRDRAMAIGVNDYLGKPYQESVLLDSIHLWSK THA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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