Pseudomonas sp. GM41(2012), PMI27_002821
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTGCTCGGCTAAACAGCTCTTCCCAAAACCGTTGCAAGGGCTTTACATTGGCACTTGCAGCGCGTTGAAGGGCTTGGTCAAAAAATCAGCGCTTCCCTA ATCGCTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCAACCGGGCAGCGCGCATATTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGA AGATTGCCTAAACCACGTGGAAAACCGCTTTGAGCTGGTCATGCTGTCTACCAAGCGTGCCCGTCAACTGGCCACCGGCGGCAAAGAGCCACTGGTTCAG TGGGAAAACGACAAGCCTACCGTTGTAGCCTTGCGTGAAATCGCTGAAGGCCTGATGAGCTACGAGTTCATCGCCAACGCTGAAATCGTCGAAGACGAAC CGCTGTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCAGTCTAAGCCATGCCTGGTCGACGTAGCACGGCGCGGGGTCACAGCGAACGGCAGGTCTCATC
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| DNA Sequence for Gene |
>PMI27_002821
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTACCTCGGCAAGGACCAGGTCAACCTGGTCCGCCGAGCGTACTTCTACGCCGAACAAGCCC ACGACGGTCAACGCCGCCGTAGCGGTGAAGCGTACGTCACGCACCCACTCGCGGTTGCGAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCTGCGATGCTGCATGACGTGATCGAAGACACCGGTATTGCCAAGGAAGCGCTGCAAGCGCAGTTCGGCGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAAGCCCAGGCTGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCGACATTCGCGTGATCC TGGTCAAACTGGCCGACCGCCTGCACAACATGCGGACCCTGGAAGTCCTGTCCGGCGAAAAACGCCGACGGATCGCCAAGGAAACCCTGGAAATCTATGC GCCCATCGCCAACCGGCTGGGCATGCACGCCATCCGCATAGAATTCGAAGACCTTGGCTTCAAGGCGATGCACCCGATGCGTTCCGCACGGATCAACCAG GCGGTCAAACGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAAATTGAAGAATCCCTCAGCCATTGCCTGGCCATCGACGAAATCCAGGGCGAGGTCA GCGGTCGCCAGAAACACCTCTACGGCATCTACAAGAAAATGCGCGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTCTACGCGTTCCGGATCATCGT CGACAAGGTCGATACCTGCTACCGCGTGCTGGGTGCTGTGCATAATTTGTACAAACCGTTGCCGGGGCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTACCAGTCGCTGCATACCACGTTGTTTGGCATGCACGGTGTACCGATCGAGATTCAGATCCGCACCCGTGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCATTGGCTCTATAAATCCAGTGGCGATGAGCAGCCAAAAGGTACTCATGCCCGAGCCCGCCAGTGGGTCAAAGGCGTGCTGGAGATGCA GCAACGGGCCGGCAACTCGCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAG CTGCCCAAAGGCTCCACGGCGGTCGACTTTGCTTACGCGGTACACACCGACGTGGGCAACAGCTGCATTGCCTGTCGGATCAATCGTCGTCTCGCACCGC TGTCCGAACCGCTGCAAAGCGGCTCCACGGTCGAGATCGTCAGCGCCCCCGGGGCACGGCCAAATCCGGCGTGGCTCAACTTCGTGGTCACCGGCAAGGC GCGGACCCACATCCGTCATGCGCTGAAACTGCAACGCCGCTCCGAATCCATCAGCCTCGGCGAACGGCTGCTGAACAAGGTCCTCAACGGTTTCGACAGC TCGCTGGAGAAAGTAGCCGCCGAGCGCGTCAAGGCGATGCTCACCGAGTACCGCCTGGAACTCATCGAAGACCTGCTCGAAGACATCGGCCTGGGCAATC GCATGGCTTACGTGGTCGCCCGCCGACTGCTCGGTGAAGGCGAACAGCTGCCGAGCGCGGAAGGCCCGCTGGCGATTCGCGGCACCGAAGGCCTGGTACT CAGTTACGCCAAGTGCTGCACGCCGATCCCGGGCGACCCGATTGTCGGCCACCTGTCCGCGGGCAAAGGCATGGTCGTGCACCTGGACAACTGCCGCAAC ATCAGCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTCTCGTGGGCCAAGGATGTCACCGGCGAATTCAATGTCGAGCTGCGCGTCGAGCTGGAAC ATCAGCGCGGCCTGATCGCTCTGCTGGCCAGCAGCGTCAACGCGGCCGACGGCAATATCGAAAAAATCAGCATGGACGAACGCGATGGCCGCATCAGCGT GGTCCAACTGGTGGTCAGTGTGCACGACCGCGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCCTGACCGGGGTGATTCGCATCACTCGCATGCGT GCTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCACTTATTACAAGGAGTCATTCATGACCAAAACAGTTATTACCAGCGACAAGGCCCCGGCTGCCATCGGCACTTACTCCCAGGCGATCAAGGCCGGCA ACACCGTTTACATGTCGGGTCAAATTCCTCTGGACCCAAAAACCATGGAACTGGTAGAAGGTTTCGAAGCCCAGACCGTCCAGGTGTTCGAGAACCTCAA AGCCGTTGCTGAAGCCGCTGGCGGTTCGTTCAAGGACATCGTCAAACTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATG GGCAAGTACTTCGACCAGCCTTACCCTGCCCGCGCCGCCATCGGCGTAGCGGCCCTGCCAAAGGGTTCGCAGGTTGAGATGGATGCCATTCTGGTCATCG AGTAATGTGCCCGGCGCAGCCTTCCGAAGGCTGCGTCGATCTTGCTTTGAAAGGATTCCACCATGCGCCAAGCGCTAGCTCTCTCGCTGGTCGCCCTACT
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSTYLGKDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARINQ AVKRARGNRKEIVNKIEESLSHCLAIDEIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS SLEKVAAERVKAMLTEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSAEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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