Pseudomonas sp. GM41(2012), PMI27_002801
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCACGCTCGCGGCGTGCTGCACGGTGACATGAAGCCGAGCAACGTCATGCTCAGCGAAGAGGGCGTGCGCCTGTTCGACTTCGGTCTGGGCCAGGCCGAG GAGGGCATCTTGCCCGGCCTGCCACACCTGAGCCGTAACCGCTTTAACGCCTGGACCCCCGGCTACGCCGCCCCCGAACTGCTCGAAGGCCAGCCGCTGT CGGCCAGTGCGGACGTGTACGGCGTGGCCTGCGTGTTGTACGAATTGGCGAGCGGCAAACACCCGTTCCGCCGCTTGCCCTCGACAGAGGCCCGCGACGG CCACCTCGAACGCGAGCTGCACGCCCCCAGGAATCTTCCGAAACACTGCTGGCCAGCCCTGCGAACGGCGCTGGCATTCAATGCGGCAGATCGAACGATC ACTGCCGCCCAACTGCGTGACGCTATGGGCGCCACTTCGTCTTTGCTGCAACGTCTGAGACTTCGGGCGTAACGGATGACTACCGAACAGGGAGCAAGCA
|
|
| DNA Sequence for Gene |
>PMI27_002801
ATGTTCAACCCAGCTAATGAAACCCACTTCAGCCTGACCGTTGAAGACTACGTCGGCGACCTGCAAGTGCTGTCGTTCACCGGCACCGAAGGCATCAGCC AGCCGTATCGCTTCGACCTGGAACTGGTCAGCGAAAACCCCGATCTGGACCTGGAAAAGCTCCTGCACAAACAGGCATTTCTGGCGCTCGATCCACAAGG TTCCGGCATCCACGGCCAGATCTACCGCGTCGCCCAAGGCGATGCCGGCAAACGCCTGACCCGCTACAAAATCTCCCTGGTGCCGCACCTGCAATACCTG CATCACCGCACCAACCAGCGCATCTACCAGCAGATGTCCGCGCCGAAAATCATCGCGCTGATCCTCGACGAGCATGGCATCAAAGGTAACGCCTACAGCT TCCAGCTCAGCCAGCCCTGCCCGGACCGCGACTACTGCGTGCAGTACGACGAAACCGACCTGCACTTCATCCAGCGCCTGTGCGAAGAAGAAGGCATTCA CTACCACTTCCAGCACAGCTCCAAAGGTCATCTGTTGGTATTCGGCGACGACCAGACCGTGTTCCCGAAACTCGGGCAGCCCACGGCGTATGTGCAAGGC AGCGGCATGGTCGCCGACGAACCGGTGATCAAAGGCTTCAAACTGCGCCTGGAAACCCGCACCGGCCGCGTCACCCGCCGCGACTACGACTTCGAAAAAC CACGCCTGCAACTCGAAGCCGCCTACAAACCCGAGGCGCAAAGCGACGCGCCGGACCTCGAAGACTACGACTACCCCGGCCGCTTCATCGACCGCGCGCG CGGCAAATTCCTCAGCCAACGCGCCCTCGAACGCCACCGCGCCGACTACCGCCAGGCCGAAGGCAAAGGCGATCAGACCACCCTGGTCAGCGGCCACTTC CTGGAAATGTCCGACCACCCGCGCACCGAGTGGAACGACCTCTGGCTGCTCACCGAAATCTTCCACGAAGGCAAACAACCGCAAGTCCTCGAAGAGTCGG TGACCAGCGACACCACCGACAAAAAGGACGACTTCCACCAGGGCTACCGCAACCGCTTCCTCGCCACCCCGTGGGACGTGTTCTACCGCCCGGCGCTGGA GCATCCGAAGCCACGCGTCCTCGGCAGCCAGACCGCCATGGTCACCGGCCCCAAAGGCGAAGAAATCCACTGCGACCAGTACGGCCGCATCAAAGTGCAA TTCCACTGGGACCGCGAAGGTTTGGCGGATGACAAAACCAGCTGCTGGATGCGCGTCTCCTCCAGCTGGGCCGGCGACCGCTACGGCGCCATCGCCATCC CGCGCATTGGCATGGAAGTGCTGGTGACCTTCCTCGAAGGCGATCCCGATCAGCCGCTGGTGACCGGTTGCCTGTACCACAAGGAAAACCAGGTTCCCTA CGACCTGCCGGCGAACAAAACCCGCACCGTGTTCAAAACCCTTAGCTCACCGGGGGGCGGCGGGTTCAATGAACTGCGGATTGAAGACAAGAAAGGTGCC GAGCAGATCTTTATTCATGCCCAGCGGGATTGGGATGAAAACGTTGAGCATGATCAGAAGATTCGGGTTGGGAATGAACGGCATGACACGGTGGAGAAGA ACACCTACACCGAGCTTAAGGCGGAAGAACATCGGACCACGATTGCTGATCGCAAGATTGAAGCGCGGATGGATGATCATCTGACGATTGGGCAGAACCA GCATGTGAAGTTGGGGACTGCGCAGCTGACAAGCGTTGGGAAAGAGATTCATCTTAAGGCTGGGGACAAGATTGTTATCGAAGCCGGGATGGAGCTGACA GTAAAAGCAGGTGGCAGCTTCATCAAGCTCGATGCCGGCGGCATCACGGTTGTTGGGCCGGTGGTGAAAATTAATGCCGGTGGTTCGGCGGGCTCGGGGA CCGGGATTGGCATCAAGCCACCGCGTCTGCCGGGCGCTGCGGATTCAGACATCGCTGGCGCGGTGCCGCCACAGGCGCTCGGCAATGTGCCGATGCCGAT GCCGCCACCGCCAGTCTGCAAGGAATGTCTGGCTCGGGCCAAACGTAACGCCCAAGCTCTGGCCGCGAGATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGGACGACTTTATGTACACAAGCAACGTGCACTGGCTCGACGAGTTATGGGTCAACGCCCAGCAACTGCAACACCAGCACCTCGACCTGCTGATCGACGC CACCAGCCTCGACTACCCGCTGCTGCAAGAATTGGCGGAGCAACCCGACGCGGCCAAACTGGCCAAGCTGTTCGAAAACACCCCGGAAGTCGCCATCGCC GATTTCGGTCCGCTGCTGCTGCGCATAGACAACGCCCGACGGCCCTGGCTGAAAACCTTCATCAGCGCCGTCGACTGCAACAAACACGTCGTAGCACTGT TCAGCCCTTGGGCATTCGAAGTGCTGGCCGATCATCTGCGAGGCTTCCTCCAGGCACAATGGAACCAAGGCCGCTCCGAAGGCGTATTGCGTTATTACGA CCCGCGTATGCTGCTGCCGGTCACCGAAACCCTGACCCCTGTGCAAAGCAACGCCTTCCACGCGCCTGTCATTTCCTGGCACTGGCTCGACCGCGACCAA
|
|
| Amino Acid Sequence |
>type IV secretion protein Rhs
MFNPANETHFSLTVEDYVGDLQVLSFTGTEGISQPYRFDLELVSENPDLDLEKLLHKQAFLALDPQGSGIHGQIYRVAQGDAGKRLTRYKISLVPHLQYL HHRTNQRIYQQMSAPKIIALILDEHGIKGNAYSFQLSQPCPDRDYCVQYDETDLHFIQRLCEEEGIHYHFQHSSKGHLLVFGDDQTVFPKLGQPTAYVQG SGMVADEPVIKGFKLRLETRTGRVTRRDYDFEKPRLQLEAAYKPEAQSDAPDLEDYDYPGRFIDRARGKFLSQRALERHRADYRQAEGKGDQTTLVSGHF LEMSDHPRTEWNDLWLLTEIFHEGKQPQVLEESVTSDTTDKKDDFHQGYRNRFLATPWDVFYRPALEHPKPRVLGSQTAMVTGPKGEEIHCDQYGRIKVQ FHWDREGLADDKTSCWMRVSSSWAGDRYGAIAIPRIGMEVLVTFLEGDPDQPLVTGCLYHKENQVPYDLPANKTRTVFKTLSSPGGGGFNELRIEDKKGA EQIFIHAQRDWDENVEHDQKIRVGNERHDTVEKNTYTELKAEEHRTTIADRKIEARMDDHLTIGQNQHVKLGTAQLTSVGKEIHLKAGDKIVIEAGMELT VKAGGSFIKLDAGGITVVGPVVKINAGGSAGSGTGIGIKPPRLPGAADSDIAGAVPPQALGNVPMPMPPPPVCKECLARAKRNAQALAAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|