Pseudomonas sp. GM41(2012), PMI27_002785
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGCATCAACGTCACTTTCAAACCTGCCACCGGTGGTGCTCAGGAAGAGATTGAACTGCCGTTGAAACTACTGGCAATCGGTGACTACACCCACCGCAAG GACGAACGTAAAGTCGAAGATCGCAAGCCGATCAGCATCGACAAGATGACCTTCGACGAAGTGCTGGCCAAGCAAGAGCTGACCCTGACGTTGAACGTGC CGAACCGCCTTCAGGAAGAGGGCAGCACTGAAGAGCTGGGCGTGCAACTGCGCGTCAACTCGATGAAGGACTTCAACCCGGCCAGCCTGGTCGAGCAAGT ACCTGAGCTGAAAAAACTGATGGAACTGCGCGACGCGCTGGTGGCCCTCAAAGGCCCGCTGGGTAACGCGCCTGCGTTCCGCAAAGCCATCGAAGGCGTT CTCGCCGACGACGAATCCCGCGGTCGCGTATTGGGTGAGCTGGGCTTGAACGCCGCCGCCCAGGACGCCTGAGTCTCCATCAGCCAAGGAAGCCAACACA
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| DNA Sequence for Gene |
>PMI27_002785
ATGAGCACTAGCGCAGCACAGCAAAAGAGCAATGAGAACGGCGAATACAGCATTCTCGACAGCATCATCGCCGAAACTCGCCTGACGCCGGACGACGAAG CCTACGACATCGCCAAGCGCGGTGTATCGGCCTTCATCGAAGAGCTGCTCAAGCCGCAGAACAGCGGTGAGCCGGTCAAGAAAGCCATGGTTGACCGCAT GATCGCCGAGATCGATGCCAAGCTCAGCCGCCAGATGGACGAAATCCTGCACCACCCGTCCTTCCAGTCCCTGGAATCGTCGTGGCGCGGCCTGCAGTTG CTGGTCGACCGCACCAACTTCCGCGAAAACATCAAGATTGAAATCCTCAACGTCTCCAAAGACGACCTGCTGGACGATTTCGAAGATTCGCCGGAAGTGA TGCAGTCTGGTCTGTACAAGCACATCTACACCGCTGAATACGGTCAGTTCGGTGGTCAGCCGGTGGGCGCGATCATCGCCAACTACTTCATGTCCCCAAG CTCGCCGGACGTGAAACTGATGCAGTACGTGTCCAGCGTTGCCTGCATGTCCCACGCGCCGTTCATCGCCGCGGCCGGCCCGAAATTCTTCGGCCTGGAA AGCTTCACCGGTCTGCCGGACCTGAAGGATCTGAAAGATCACTTCGAAGGCCCGCAATTCGCCAAATGGCAGAGCTTCCGCCAGTCGGAAGACTCCCGTT ACGTTGGCCTGACCGTGCCGCGTTTCCTGCTGCGTAACCCGTACGACCCGGAAGAAAACCCGGTCAAATCGTTCGTGTACAAAGAAACCGTCGCCAACAG CCACGAGCATTACCTGTGGGGCAACACCGCCTACGCGTTCGGCACCAAGCTGACCGACAGCTTCGCCAAATTCCGCTGGTGCCCGAACATCATCGGCCCG CAGAGCGGTGGTGCGGTTGAAGACTTGCCGTTGCACCACTTCGAAAGCATGGGCGAAATCGAAACCAAGATTCCTACCGAGGTTCTGGTTAGCGACCGTC GTGAATACGAACTGGCCGAGGAAGGCTTCATCTCCCTGACCATGCGTAAAGGCTCCGACAACGCGGCGTTCTTCTCCGCCAGCTCGGTGCAGAAGCCGAA GTTCTTCGGCATCAGCGCAGAAGGCAAAGCAGCAGAGCTGAACTACAAGCTCGGCACCCAACTGCCGTACATGATGATCGTCAACCGCCTGGCTCACTAC TTGAAAGTGCTGCAGCGCGAGCAACTCGGTTCGTGGAAAGAACGTACCGACCTTGAACTGGAACTCAACAAGTGGATTCGCCAGTACGTGGCCGACCAGG AAAACCCAAGCGCCGAAGTGCGTGGCCGTCGTCCACTGCGCGCTGCCCAGATCATCGTCAGCGATGTTGAAGGCGAGCCTGGCTGGTACCGCGTCAGCCT GAACGTGCGCCCGCACTTCAAGTACATGGGTGCCGATTTCACCCTGTCGCTGGTTGGCAAGCTGGACAAAGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGGAGCTCACTCATGACTGGATACGGCAGCCTTTTCGAACGCCTGGGTGGCGACGCGGACAAACGCGTCGGCTGGAGCCGTGAGGTCTCCGCCATGGCG TCCGTGGCTGCCCATCTGGCCAAGATGCTCAGCACCCGTGCGGGCAGCGTGCAAACGCTGTCCGATTACGGGCTACCCGATCTCAATGACATGCGTCTGA GCCTGCACGACTCCCTGAGTCAGGCCCGTTTGGCCATCGAAAATTTCATCGAAGCCTACGAGCCACGCCTGAGCAATGTGCGTGTCATTTCCCTGCCGCG TGACCACGATCAGCTTCGCCTGTCCTTCAGCATCGAAGGCTTGCTGGAAGTTGATGGTTTCAAGCGTCAGGTCAGTTTCGCCGCGCGCCTGGATGGCAGC GGTCAAGTGAAGGTCAACTAAGGAGATTCGTATGTCCGGCAAACCAGCAGCACGTGTCACCGACCCTACCGCTTGCCCGCTCCCCGGTCACGGCACCAAC
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| Amino Acid Sequence |
>type VI secretion protein
MSTSAAQQKSNENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNSGEPVKKAMVDRMIAEIDAKLSRQMDEILHHPSFQSLESSWRGLQL LVDRTNFRENIKIEILNVSKDDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIANYFMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLE SFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDSRYVGLTVPRFLLRNPYDPEENPVKSFVYKETVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGP QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHY LKVLQREQLGSWKERTDLELELNKWIRQYVADQENPSAEVRGRRPLRAAQIIVSDVEGEPGWYRVSLNVRPHFKYMGADFTLSLVGKLDKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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