Pseudomonas sp. GM41(2012), PMI27_002769
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCACTGGACGCCTTTGCCCGCTTCGACGCCGACCTGGCGTTGTCGGTGGCCCAGTACGACAAGATCATCGACCGCGAATACAAAACCGCGTTGCGTGAAC TTGCCACCTACATGATGGAAGACCCGCGCTCTATCTCGCGGGTCTTGAGCATTATCTGGGTGCTGCGTTCGCTGGAACGGATTGGCGACCACGCGCGCAA TATCTCGGAGCTGGTGATCTACCTGGTGCGCGGCACCGACGTGCGGCACCTGGGCCTCAAGCGCATGAAAGAAGAAGTTGAAGGCACAAGTGGCGAAACC GCTAATGTTCCGGGCAAAGCTGACGATAAGTAAGATTGCCTGAGAAAAGCGCCCGGCCTTTTGGCCGGGCGTTTTTGTTTGTGGTTGATGAATTCGAAAG CAGCACCCGCGAACGAAAAGTCCCGGCGTGACTGAAGGTTTTTGGCAATGTGCCATCAGCAAAGCGGTATGCTTGCCGGGATTTTTTAAAGGGGTGATGG
|
|
| DNA Sequence for Gene |
>PMI27_002769
ATGAGTAAGGTCAGTGTGTTGGTCGTGGACGACGCGTCGTTCATTCGTGACCTGGTGAAGAAGTGCTTGCGCAACTACTTCCCGGGTATCCGGATCGAAG ACGCGGTCAACGGCAAGAAGGCTCAGGCCTTGCTGGCACGGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCCGGCCTGGAGCT GCTGACCTGGTGCCGCGAGCAGGACAACCTCAAGACCATGCCGTTCGTGATGGTGACCAGCCGTGGCGATAAAGAGAACGTCGTCCAGGCGATCCAGGCC GGGGTTTCGGGCTACGTCAGCAAGCCGTTTACCAACGAGCAACTGCTGACCAAGGTCAAGCAGGCCCTGAACAAGGTCGGCAAGCTCGACACCTTGATGA ACAGCGCGCCGACCAAAATGAACTCGGCGTTCGGCAACGATTCCCTGAGCGCATTGACCGGTGGCAAGGCTGCCGTGGTCGCGCCCGCCGCGGCGCCGGT CAACCCGTTCGCCAAACCTGTCGCCGCCGCCCCGGCCCCGGCGGCTGCTCCGTCTCGCGGTCTGCTCAACAGCCCGCCGATCAAGCCTGCAGCGTCCTCC GCGGCTCCAACGGGCGGTCGTGGCCAGGGCCAACTGCGCCTGCCGAACGGCATTCAGCAATGTGTGATCAAGGCCTTGAGTCTCAAGGAAGCACTGCTGG TGGTGAAACGCACCGACACCTTGCCGCAAGTGCTCGACAGCGCCGTGCTGGACCTGGAGCAGGGCGATAACGCCGAAACCGCTCGTCTGAACGGCTACCT GCATGCCATCGTCGCCCACGAGCCAAAACCCGACAGCGACTGGCTGCAACTGACCTTCCGTTTCGTCGACCAGGACGCGCAGAAGCTCGATTACATCTCG CGGTTGATAGCACGTGGTACGGCGCAGAAGCATTTCGTACCGGGCGCGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCTTCGTCGCCTGACAGGCCGCCTTCGCGAGCAGGCTCACTCCCACATTTGAAATGCATTCCAATGTGGGAGTGAGCCTGCTCGCGAAGGGGCCATCAGA TTCACCACCCATCCGCTGAACGGCCCATTTTGAAACATCTGTCGACTACCCGGGTCCATTGCAGCTGCTAGGCTCCTACCCAGGACTTACTCGACAGAAT CTTGCCCATGCTCGCGCGCCTGCTGTTTTTTTGCGGTCTTTTCATGGCCTCCACCTCGGCGTTGGCCATGACGATCTACAAGTCCACCGACGCCAGTGGC GTGGTCTCCTACAGCGACCGCCCCACGACAGGCTCCAAGGTGTTCGTTTTTCGTGATCGCATGGTCGAGAATCTTGAGCGCCAGGTGTACGTCGTCATCA CGAAGAAGAAGGGCGTGGACAGCGTTTACGTGCGCAATGACCTGTATGCGCCGGTAGAAATCGAGTTGAGCTTCGGCGGGCTGAAGAACGTCAGCGGTGC
|
|
| Amino Acid Sequence |
>chemotaxis protein CheY
MSKVSVLVVDDASFIRDLVKKCLRNYFPGIRIEDAVNGKKAQALLAREAFDLVLCDWEMPEMSGLELLTWCREQDNLKTMPFVMVTSRGDKENVVQAIQA GVSGYVSKPFTNEQLLTKVKQALNKVGKLDTLMNSAPTKMNSAFGNDSLSALTGGKAAVVAPAAAPVNPFAKPVAAAPAPAAAPSRGLLNSPPIKPAASS AAPTGGRGQGQLRLPNGIQQCVIKALSLKEALLVVKRTDTLPQVLDSAVLDLEQGDNAETARLNGYLHAIVAHEPKPDSDWLQLTFRFVDQDAQKLDYIS RLIARGTAQKHFVPGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|