Pseudomonas sp. GM41(2012), PMI27_002750
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGACGGCCTGCTCGACAGCGGCATTCAAGGCCTGGTGCTGGAGTGCTACGGCAGCGGCACCGGACCGAGCGACAATCCAGAGTTCCTCGCCAGCCTGG AACGCGCGTGGAACAAGGGTGTTGTGGTGGTCGCGGTTACGCAATGCCATGAAGGTGGCGTCGAGCTGGATGTTTACGAGGCTGGCAGTCGCTTGCGTGG TGTCGGCGTGTTGTCCGGTGGTGGCATGACCCGCGAAGCCGCGTTCGGCAAGTTGCATGCGTTGCTGGGTGCCGGGCTCGACACCGACGAAGTTCGGCAG CTTGTAGAACTCGACCTCTGCGGCGAACTCAGCTGACACCCTGCAAAACCCTGTGGGAGCGAGCCTGCTCGCGATAGCGGTCGTCCATCCAACATTGATG CTGACTGACACACCGCCATCGCGAGCAGGCTCGCTCCCACAGGATCTCCATCAGGCATGTAACTTGCTGCCGTTCCAGCATCCAATGGCTGGAACACCCC
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| DNA Sequence for Gene |
>PMI27_002750
ATGCTCCACTCCCACCTCACCACCCTCAACGCTGTCTCTCTGGTGCTCAACACCTTCAAGGCCGAGGGCTTGTCCAGCGAAGCGCTGCTGGCCGGCAGCG GCATCAGCGCGGCGGATCTGAGCCGGGCGGACACGCGCATCACCACCAATCAGGAGATGCAGGTCTGCGCCAACGCCGTCGCGCTCAAGCGTGACATCGG CCTGGAACTGGGCCGGCGAATGCACGTTTCGTCCTACGGCATGCTCGGGTACGCCTTACTCACCAGCGCCACTTTAGGTGACGCCTTGCGGCTGGCACTG CACTACCCGGCGCTATTAGGAACACTGTTCGAGTTGAGCCTGGAAGAAGATAACGAGCGCATCTGGCTCACCGCTGGCGACTATCGGGAAAACCCTGCGC TGGCGCCATTCAATGTCGAGTTTTGCCTGGTTTCGATGAAGGTCACTTGCGAAGACCTGCTCGGCCAACCTTTGCCGCTGCTGGGCGCCCGCTTCGAATA CCCGGCGCCGGACTATCAGGCACGCTACACCGAGCGTTTCGATTGCCCCTTGCAGTTCGACGCTGCGTCCAACGCCTTTGCCTTCGACAAAGCCTGGCTG GAGCACCCTCTGCCTCTGGCCGACGCCATCACCCATCAGGCCATGGCCGAACGCTGCCGCAAACAAAACACCGAGTTCACGGGTCGCCAGGTATGGCTGG GCCGCATCCGCCAACTCCTCGCGGCACAATTGAGCGCAGCGCCGGGCCTGGATGGGCTGGCTGAACAGTTGAACTGCTCGGCACGCACCTTGCGCCGACA TCTCAAGGACTTGGGGTGCAGCTATCAAGAGTTGCTCGATGAACTGCGGTTCGAGCAGGCCAAACGCATGCTCTGCGAGGACCAACTGCCGATCTATCAA ATCGCCGAGGCATTGGGTTTCAGCGAGACCGCGAGTTTCCGTCATGCGTTCGTGCGCTGGAGCGGCGTGGCGCCGAGTCAATTCAGACCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTACGACTCCCCTGTAGGAGCAAAGCTTGCTCGCGATGCGGGCAACGCGGTGTCTCTGCAAAAACGCGCTGATGCCATCGCGAGCAACCTTTGCTCCTAC GGGGTCTGTCGCGCCAACAAGGGGCGAATTCCGGTCAATTCTTTTGGCCATATCGATCCCCTTTTGGCCTTTCCTGCCGTTCTCTCAAACGCCGCGCGCC GCAAGACTGTGTTCAACCGAATCAGCCTGCGGAGAACAAGAAATGCTGACGATCTACTCGGACGATCACCACCTGCACCACGGCCGTTGTGAATTGATGG ACGGGCAACTGATGCCCTGCTTCGAAATGCCTTCGCGAGCCGACCATGTTCTGCAGCGCGTGCAGTACCGCGACCTCGGTCCGGTCGAAGCGCCGCAGGA TTTCGGCCTCGACCCGATCGCGCGCGTCCACAGCCGCGACTACCTCGACTTCTTCAAAGGTGCCTGGGCGCGCTGGACCGAATTCGCTACCGACGGCGAC
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| Amino Acid Sequence |
>AraC family transcriptional regulator
MLHSHLTTLNAVSLVLNTFKAEGLSSEALLAGSGISAADLSRADTRITTNQEMQVCANAVALKRDIGLELGRRMHVSSYGMLGYALLTSATLGDALRLAL HYPALLGTLFELSLEEDNERIWLTAGDYRENPALAPFNVEFCLVSMKVTCEDLLGQPLPLLGARFEYPAPDYQARYTERFDCPLQFDAASNAFAFDKAWL EHPLPLADAITHQAMAERCRKQNTEFTGRQVWLGRIRQLLAAQLSAAPGLDGLAEQLNCSARTLRRHLKDLGCSYQELLDELRFEQAKRMLCEDQLPIYQ IAEALGFSETASFRHAFVRWSGVAPSQFRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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