Pseudomonas sp. GM41(2012), PMI27_002732
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCCATCAGCTGCTCGATGCGATGGCGCATCTCGGCAGCGGCCTTATTGGTGAAGGTCACCGACAGGATGGAGTGGGGCGAGGCGTTTTCGACCTGGATC AACCAGGCGATACGGTGCACCAGCACTCGGGTTTTACCGGAACCAGCACCGGCCAGGACCAACTGACGACCCACGCGGGCAGCTACGGCCTGGCGTTGGG CATCGTTGAGGGAGTTCAGCAGAAGGGAGAGATCATCGCGCATCGGGGCATTCTAGGGGGCGGCGTCACACCGGGCAAACCCTGCATTGTTTTAGCCGAT GAAAGATAGGTGCAGGACGACCGGTCAGTCACTGGCTGCAAGCGTTGGCGGGGCTCGCTTGGCTGCTTTTACACGGGGCCAGGCAGTCGATACTTTGGTC TATTTATGATCTGGAGCAGTTTGGTCCAGGCATATGCTTGTGTATGCTCCGTCGACGTTTCGGGCGCATGCTCACCATTATAAGAACAAGAACATTGCCT
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| DNA Sequence for Gene |
>PMI27_002732
ATGACCCTCAGCACCGACCTGTCGGGCCCCGTCGTGGAGCCCCGGGTTATCCGCAAACAGTACGCCATGGAAATGGCGGTCGAACGCACGCGTCTGCTTT ATCAGGGCTCGTTGCTGCCCACGTTATTCATGTTGATCAACGGTCTGGTCTGCGCTGGCTTGCTTTGGAGCCCGCAGCGTTACTTCCTGGTCAGCGTCTG GCTGGTGTGGCTGTTGTCGCTGGTGGCGTTGCGGGTGATTCAAGTCGCGGCCTTCGATTCGGCGATACCCAATCGTCAGGCCCATCCGATCTGGCGCCGC ATGTTTTTGCTGGGTTCGGCCATGACCGGCCTGACCCTGGCCGGTGCCGGCATTGCGCTGGTACCCGCCGATAACTTCATGCAACAAGCCTGGGTGTTCG GCCTGATCGGCGCTGCAGCGCTTTCGGCCAGTGTTGCCTACGCGGTCAGCCTGCCGGCGTTCCTGTCCTTTACCTTGCCCTGTCTGTTGCCGGCCATCGG CTATCTGTTCTGGGGCGGTGATGAACAAGATCATGGCTGGGGCTGGTTCGGTCTGATTTTATTGGGCGCGTTGAGTGTGGTCGCCTGGCAGGTCAATCGA CTCATCGATAGCGGGCTGTTGCGGCGCTTCCAGAATCAGGCGCTGATCGAGCACTTGCAGCAGGCTCAAAACAGCAGCGATCAGCTCAATCAAAAGCTGG CCAAGGAAATCGACCAGCGCCGTCGTGCCGAAGACGAGCTGCGGCAAATTCAGATCGAGCTGGAAAGCCGTGTTGCCCAGCGCAGCCTGGAGCTGGACGC TGCCAATCAGGCCCTGAGCAAGAGTGAAGCGCGTCTCGCCCTGGCGTTGAAGGCCAGTGAGCTCGGTCTGTGGGACTGGAACCTGCAAACCGACGAAGTC CATCACACCCAGCTTCAGGAGCTGTTCGGCCTGGAGCCGGAGTTCGTGACGGCGATGCTTCGCCACCTCAAGCCGCGCCTGCACCCCGATGACTTGCCGT CGCTCAAGCGCGCACTGGTCGAGCATTTGAAGGGCCGCAGCGAGGACTACCAGATTGAATACCGCGTGCGTCACGGCGATGGCCATTGGGTCTGGATCGA AGACCGTGGTCGAGCGGTTGAGCGCGGCGAAAATGGCCGGGTGATCCGCATGGTCGGCACCCGTCGCGACATTAGCGTCAGCAAAGCTCTGGAAGAGCAA CGACAACTGGCCGCAACGGTGTTCGAAGCCGCCAGCGAAGGCATTGTGATTTTCGATCCGAATTACGCGTTGATCGCGGTCAATCAGGCCTTCAGCCGAG TCACCGGCTATGACATTGAAGACATGATTGGACGCAACGTGGTCGAGTTGCCGTGCAGCCGCGATGCCCGCCGGCACTACGCTGCGATTCGTCAGGCGCT GGAGCAGCACGGCAGTTGGCAGGGCGAGCTGGTAGAAACCCGCAAGAATGGCGAGTTGTATCCGCAATGGTTGCAACTGAACGCGGTGCGCGATGCTCGG GGAAATGTGAGCCATATCGTGGGCTTCTTCGCCGATCTGTCGGCCCGGCGCGAATCTGAAGAGCGCATGCGTTACCTGGCGCATTACGACGAATTAACGG GTCTGGCTAACCGTTCACTGTTCCGCGAACGGCTAAACGAGGCTCATCAGCGGGTGCGCCAGGGCGGCTACCGCAGTCTGGCGTTGCTGCACATCAATCT GGATCGTTTCAAGCTGCTCAATGACAGCCTTGGCCATGAAATCGCCGACCAGCTCTTGCAGAAGATGGCCCGGCGGCTGGTCAATGCGTTGCCTGAAGCA GACACCATCGCTCGCTTGTCCGGCGATGAGTTTGCCGTGTTGTTCAATGCCTACGGCAACCTGTCGAGCCTGGCGCGGGTGGCGACCCGACTGTCGACCA AGCTGCGCTTGCCGATCACCGTCGAGGGCCATGAACTGGTGGTTAGCGCGTCCATGGGCATCAGTATGTTGCCGGACAACGCGCGAGAAATTTCCGCGCT GGTCCATCAGTCCAATATGGCCATGCAGCACGCCAAGCACTTGGGCGGAAATAACTTCCAGTTCTATACCGACAGCCTGCAAGCCAGCACGCTGGAGCGC TTGCAGCTGGAAAATCAGCTGCGCAAAGCCATCGAAGAGAAACAGTTGATGGTGTTTTATCAACCGAAACTGTGCCTCGCCACGGGTCGGTTGAATGCCG CCGAAGCGCTGGTGCGCTGGGACCACCCGACCATGGGCCGTGTGCCGCCAGGGGACTTCATCGGCCTGGCCGAGGAAACCGGGTTGATCGGCCCGATCGG CGAGTTCGTGTTGCGTCAGGCCTGCTGGCAAGCCTGTGAGTGGCAGCGTCAGGGGCTTGCGCCGATTCGGGTGTCGGTGAATCTGTCGGTGCATCAATTG CGTCAGGGCAAACTGGTCAGCCTGGTGCGTCAGGTGCTGGAAGAAACCGGTCTGGCGCCGCACTACCTCGAGCTGGAACTCACCGAAAGCCAGTTGCTGG ACAGCGTCGAGCACATCATCGCGACCTTCCAGCAATTGCGTGATTTGGGGGTCAAGTTGGCGATTGATGATTTCGGCACCGGGTATTCGTCCTTGAGTTA CCTCAAGCGCATCCCTGTGGATTACGTGAAGATCGATCAGGCATTTATCCGCGGTCTGGGGGAGGGTAGCGAGGATGCGGCGATCACCCGGGCAATCATT GCCATGGCGCACGGCTTGTCGCTCAAAGTGGTGGCCGAGGGTGTGGAGCGGGCAGAGCAGTTGGAGTTTTTGAAAGCCGAGCACTGCGATGAAGTGCAGG GCTATTTGATTAGCCGCCCTGTCGAGGCCGATGGCCTGGCGGCGCTGTTGCGTGCGGACGAGAAACCCTTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGCTACATGGAGCGCATGTGGCGTGAAATGGGGACATCGAGTTACGCATTGAGCAGGCAAAAAGCCGATTCATGTAGTATAACTACAAGCGTGCTACAT CCCCGGCACCTGCCAATAACAAAGAGTCCAGCCCTTTGAATCTGCTGCAACACATCGCCCAGTCACGCCACCTCTTACGCAAGTCGGAGCTCAAGGTCGC CGACCACGTGCTGCTTGATCCTGCGGCGGTGATGCACAGCTCCATGGCCGACCTGGCCCACAACGTGGGCATCAGCGAACCGACCATCGTGCGGTTCTGT CGCGCCATCGGTTGCTCCGGTTTCCAGGACTTGAAGCTGAAACTGGCACAGAGCCTGGCTGCCGGCGCGAGCTTCGGACAATTCGCGATTCATGAAGACG ACTCGGTCGCTGACTACAGCCTGAAAATCTTCGACACCACCCTGCACACGCTGATGGAGGTTCGCGAGAAGCTTGATCCGGTGGAGTTGCAGCGTGCGGT
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| Amino Acid Sequence |
>diguanylate cyclase
MTLSTDLSGPVVEPRVIRKQYAMEMAVERTRLLYQGSLLPTLFMLINGLVCAGLLWSPQRYFLVSVWLVWLLSLVALRVIQVAAFDSAIPNRQAHPIWRR MFLLGSAMTGLTLAGAGIALVPADNFMQQAWVFGLIGAAALSASVAYAVSLPAFLSFTLPCLLPAIGYLFWGGDEQDHGWGWFGLILLGALSVVAWQVNR LIDSGLLRRFQNQALIEHLQQAQNSSDQLNQKLAKEIDQRRRAEDELRQIQIELESRVAQRSLELDAANQALSKSEARLALALKASELGLWDWNLQTDEV HHTQLQELFGLEPEFVTAMLRHLKPRLHPDDLPSLKRALVEHLKGRSEDYQIEYRVRHGDGHWVWIEDRGRAVERGENGRVIRMVGTRRDISVSKALEEQ RQLAATVFEAASEGIVIFDPNYALIAVNQAFSRVTGYDIEDMIGRNVVELPCSRDARRHYAAIRQALEQHGSWQGELVETRKNGELYPQWLQLNAVRDAR GNVSHIVGFFADLSARRESEERMRYLAHYDELTGLANRSLFRERLNEAHQRVRQGGYRSLALLHINLDRFKLLNDSLGHEIADQLLQKMARRLVNALPEA DTIARLSGDEFAVLFNAYGNLSSLARVATRLSTKLRLPITVEGHELVVSASMGISMLPDNAREISALVHQSNMAMQHAKHLGGNNFQFYTDSLQASTLER LQLENQLRKAIEEKQLMVFYQPKLCLATGRLNAAEALVRWDHPTMGRVPPGDFIGLAEETGLIGPIGEFVLRQACWQACEWQRQGLAPIRVSVNLSVHQL RQGKLVSLVRQVLEETGLAPHYLELELTESQLLDSVEHIIATFQQLRDLGVKLAIDDFGTGYSSLSYLKRIPVDYVKIDQAFIRGLGEGSEDAAITRAII AMAHGLSLKVVAEGVERAEQLEFLKAEHCDEVQGYLISRPVEADGLAALLRADEKPL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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