Pseudomonas sp. GM41(2012), PMI27_004531
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCCTTCTACGGCATGTCGACCTTCGAAGGCCCGATGATGGCCATCAAGACCGTCAACTCGCTGTCTCACTACACCGACTGGACCATCGGCCACGTAC ACGCCGGCGCCTTGGGCTGGGTAGCGATGATCTCGATCGGCGCCATCTACCACATGATCCCGAAACTGTTCGGTCGTGTGCAGATGCACAGCATCGGCCT GATCAACACGCACTTCTGGCTCGCGACCATCGGTACCGTTCTGTACATCGCTTCGATGTGGGTCAACGGCATTACCCAGGGTCTGATGTGGCGTGCAATC AACGACGACGGCACCCTAACCTACTCGTTCGTTGAAGCGCTGCAAGCCAGCCATCCTGGTTTCATCGTTCGCGCCCTGGGCGGTGCGTTCTTCGCCAGCG GCATGCTGTTCATGGCCTACAACGTATGGCGTACCGTACGTGCCTCGAACCCGGCAGAAGCCAAAGCTGCTGAACAGATTGCTGTAGTTGGAGCTCACTG
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| DNA Sequence for Gene |
>PMI27_004531
ATGAAGCATGAAGCAGTCGAGAAGAACATTGGCCTGCTGGCCTTCTTCATGGTTATCGCCGTCAGCATCGGCGGCCTGACCCAGATCGTTCCGCTGTTTT TCCAGGACGTCACCAACAAGCCGGTCGAAGGCATGAAGCCTCGCACCGCCCTTGAACTGGAAGGCCGCGACATCTACATCGCCAACGGTTGTGTCGGCTG CCACTCGCAGATGATCCGCCCGTTCCGTGCTGAAACCGAACGTTACGGCCACTACTCGGTCGCCGGTGAAAGCGTCTGGGACCACCCGTTCCTGTGGGGG TCCAAGCGTACCGGTCCGGACCTGGCCCGTGTTGGCGGTCGTTACTCCGATGACTGGCAGCGTGCGCATTTGTACAACCCGCGCAACGTAGTGCCTGAGT CGAAAATGCCGGCCTACCCGTTCCTCGTGGAAAACAAGCTCGACGGCAAAGACACCGCCAAGAAAATGGAAGTCTTGCGCACGCTCGGCGTCCCTTACAC CGACGAAGACATCGCCGGCGCCAAGGATGCTGTGAAGGGCAAAACCGAAATGGACGCGCTGGTGGCCTATCTGCAAGGCCTGGGCACCATCATCAAAAGC AAACGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTAGATGGATATCGGGATGATTCGTGGCCTGGGCACCGTTGTTGTGATGGTGGCCTTCATCGGTCTGGCGTTGTGGGTATTCAGCCCCAAGCGCAAGTC GGAGTTTGAAGACGCGACCTTGCTGCCTTTCGCGGATGATCCCGAAGCCATCAAGCACGTCGAGCAAGCTTCTAGGAGTAACAAAGAATGACTACGTTCT GGAGTCTGTACGTCACAGTCCTCAGTCTCGGCACGATCTTCGCCCTGACCTGGCTGCTGCTGTCCACCCGCAAGGGCCAGCGCAGCGAAGCCACCGAAGA AACGGTTGGCCACTCCTTCGACGGGATCGAGGAGTACGACAACCCACTGCCAAAATGGTGGTTCATGCTGTTCGTGGGCACCATCATCTTCGCCCTGGGC TACCTGGTGCTGTACCCGGGCCTGGGTAACTGGAAAGGCCTGCTGCCGGGGTACAACTACCTCGATAACGAAAAGCAGACCGCGTTCGCCAACGGCCAGA
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| Amino Acid Sequence |
>peptidase S41
MKHEAVEKNIGLLAFFMVIAVSIGGLTQIVPLFFQDVTNKPVEGMKPRTALELEGRDIYIANGCVGCHSQMIRPFRAETERYGHYSVAGESVWDHPFLWG SKRTGPDLARVGGRYSDDWQRAHLYNPRNVVPESKMPAYPFLVENKLDGKDTAKKMEVLRTLGVPYTDEDIAGAKDAVKGKTEMDALVAYLQGLGTIIKS KR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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