Pseudomonas sp. GM41(2012), PMI27_004198
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATGCCGGGTGCGCTGGAAGGTGCCCGGGCGATCCAGCAGGAACTGGGCGACAGCGGCAACGCGCCGGCCCGTCCGCATTTCGCCGACTGGATGGTGCGT GAAGGTTTCGTCAAGGATCGCGCCGAAGCGTTCCGCAAATGGCTGGGCGCCGGCAAGCTGGGGGACGTCAAGCAACACTGGCCGACCCTGGAAGACACGG TCGAAACCCTGCGTGCCGCCAAGGCCTGGGTCAGCCTGGCGCATCCGTGGCACTACGATTTCACTCGCAGCAAGCGTCGCCGCCTGATTTCTGACTATAT TCAAGCAGGGGGCCACGCAATCGAAGTGGTCAATGGCCATCAGCCCGCCGAGCAAGTGGGCAGCCTGGCGATTCTCGCCCGTGAGTTCGGTCTGCTGGTC AGCGCCGGCAGTGATTTTCATGGCCCTGGAGGCTGGTCCGAGATCGGTGAGTACCGCCCGCTCCCGGAGGATCTGCCGCCACTGTGGTGTCGATTCAAAC
|
|
| DNA Sequence for Gene |
>PMI27_004198
ATGACCCAATTATTGCCGCCGTCTGAACAGGTAGAGAATGTGAGTCAATTTTTCCAGATTCATCCGGAAAACCCGCAAGCGCGCCTGATCAAACAGGCTG TCGAGATCATCCGCAGCGGCGGGGTGGTGATTTATCCCACAGACTCGTCCTACGCCATTGGTTGCCAGATCGGCGACAAGAATGCCGTGGAGCGCGTGCG TCGGTTGCGTGGACTGGATGACAAGCACAACTTCGCACTGATTTGCAGCGACCTGTCGCAACTGGGGCTGTTCGCCAAGATCGACACCGGCCTTTTCCGT TTGCTCAAGGCCCACTTGCCGGGTCCGTATACCTTCATTCTCAACGCCACCCGCGAAGTCCCGCGGCTGTTGTTGCACCCGAAAAAACGCACCATCGGCC TGCGCGTGCCGAGCCATCCGATTGCCCTGGCGCTGCTGGAGGAACTCGGCGAACCGCTGATGAGCGTGACCCTGATCATGCCCGGCGAGACCGACCCGAT GACCGATCCTTATGAAATGCGTCAGTTGCTTGAGCATCAGGTCGACCTGATCATCGACGGCGGTTTCGGCGGGATCAAGGCGTCCACCGTGATCAATCTC GCCGACGGCGAGCCGGAAGTGATCCGCGTTGGCTGCGGCGACCCGACGCCGTTCATGGCCGAGGCGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ATGTCTGCAGTAGAACCCGTTGTCGACAGTCAGGCCGGAGCCCAGCAAGAGCTGCCCTTCGCGATGGTCTATGGCCAGGCGGTCATGGAAATGCCGCTGG ACCTGTACATTCCACCGGATGCGCTTGAGGTCTTTCTCGAAGCCTTCGAAGGCCCCCTCGACCTGCTGCTGTACCTGATCCGCAAACAGAACATCAACAT CCTCGACATCCCGGTGGCGGAAATTACTCGTCAGTACATGGGTTATGTCGAGTTGATGCAGTCGGTGCGCCTGGAACTGGCCGCCGAGTACCTGGTCATG GCTGCGATGCTGGCCGAGATCAAATCGCGGATGCTGCTGCCGCGTGCCGAAACGATCGAAGCCGAAGAAGACGACCCCCGCGCTGAACTGATCCGCCGTT TGCAAGAGTACGAACGCTTCAAGGCCGCAGCCGAAGGCATCGATGGCCTGAGCCGTGTGGGCCGTGACGTGGTAGTCCCCAAGCTCGACGCCCCGGAAGC
|
|
| Amino Acid Sequence |
>translation factor Sua5
MTQLLPPSEQVENVSQFFQIHPENPQARLIKQAVEIIRSGGVVIYPTDSSYAIGCQIGDKNAVERVRRLRGLDDKHNFALICSDLSQLGLFAKIDTGLFR LLKAHLPGPYTFILNATREVPRLLLHPKKRTIGLRVPSHPIALALLEELGEPLMSVTLIMPGETDPMTDPYEMRQLLEHQVDLIIDGGFGGIKASTVINL ADGEPEVIRVGCGDPTPFMAEA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|