Pseudomonas sp. GM41(2012), PMI27_003881
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGGCCTTTGTAGGAAAAGCGCGAAGTGCCATCCGGCATCAGGCCTTTACCCTGAGTCGCGCGAATCGCCTGGCACAGGTTGGTTTTACCCGACAGACAG AATTTGCACTGGCGACATTCCGGGGTGTACAGCGGGATCACATGATCGCCGACTGCGACGGAGGTTACGCCTTCACCGATCGCCTCGACTACCGCACCAC CTTCGTGACCGAGGATCGACGGGAAGATACCTTCCGGGTCCGCGCCCGACAGCGTGTAGGCGTCGGTATGGCAGACACCGGAGGCAACCACACGCAGCAG GACTTCACCGGCCTTGGGCATGGCGACATCGACTTCAACGATCTCGAGGGGTTTCTTGGCCTCGAAGGCAACGGCAGCGCGCGACTTGATCATGTGGATT CTCCAGTGAATTAAAACGAGACAGTGAGTGTAATACAGCGCCTGACGGTGAATAATCTGGACAAAAGCAAAACATTATTGCCATACAGGGATAATCCTTG
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| DNA Sequence for Gene |
>PMI27_003881
ATGTCCGAAAACCGCTGGGAAGGGATCGACGAGTTCGTCGCCGTGGCCGAGTGCAGTCAGTTCACGGCTGCCGCGGAACGCCTCGGGGTTTCTTCCTCCC ACATCAGTCGACAAATAGTACGCCTCGAAGAGCGCCTTCAGACGCGACTGCTTTATCGCAGCACCCGCCGGGTCACTCTGACCGAAGCCGGGCAAACCTT TCTGCAACATTGCCAACGCCTGCAGGATGGTCGCGAAGAAGCACTGCGAGCGGTGGGTGACCTGACCAGCGAACCCAAAGGCATGCTGCGCATGACCTGC GCCGTGGCGTACGGCGAACGATTTATCGTGCCGCTGGTGACGCGTTTCATGGGGCTCTATCCGCAACTGCGAATCGACATCGAACTGAGCAATCGTCAAC TCGACCTCGTGCACGAAGGGCTGGACCTGGCGATCCGTCTCGGTCGCCTGCAAGACTCGCGGCTGGTAGCGACACGCCTGGCGCCACGACGCATGTACCT GTGCGCATCGCCATCCTATCTGGAACGCTACGGCCGCCCGCATAGCTTGTCGGAACTGAGCCGCCACAACTGCCTCATCGGTAGCTCGGACATCTGGCAA CTGGAACAGAACGGGCGGGAATTTTCCCAGCGGGTGCAGGGAAACTGGCGCTGCAACAGTGGGCAAGCGGTGCTGGATGCGGCGTTACAGGGAGTGGGTT TGTGTCAGTTGCCGGACTATTACGTGCTGGAGCACCTTAAAAGCGGTGAGTTGATTTCGCTGCTGGAAGCCCACCAACCGCCGAACACCGCCGTGTGGGC GCTTTATCCGCAGCAACGGCATTTGTCGCCGAAGGTGCGCAAGCTGGTGGATTATCTGAAAGAAGGGTTGGCCGAGCGGCCGGAGTATCGGGTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATCAAAAGATCGCAGCCTGCGGCAGCTCCTACATTGGAATGCGGTTTCCTGTAGGAGCTGCCGCAGGCTGCGATCTTTTAGCAGCGATTAGCCCAGCGC TGGCGCAACCATTCCAGGTCTTCGGGGCGCGTGACCTTGAGGTTGTCGGACCGGCCTTCAATCAGTCGCGGCGCCAGGCCTGCCCACTCCATTGCTGAAG CTTCGTCAGTGATGACCGCATCGGCCACCAGGCTGTCGGCCAACGCCCGATGCAATGCACCAAGGCGAAACATCTGCGGCGTATAGGCTTGCCAGATAAC ACTGCGATCCACGGTTTCGACCACGCGACCGTGCTTGTCGACCCGCTTGAGGGTATCGCGTGCCGGAACCGCCAGCAGTCCGCCAACCGGATCATCTGCG AGTTCACCCAGCAACTTGTCCAGATCATCACGGCTCAGATTCGGCCGCGCGGCATCGTGAACCAACACCCAATCCTCATCGTCAGCGCCTTGCGCATGCA
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MSENRWEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIVRLEERLQTRLLYRSTRRVTLTEAGQTFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTC AVAYGERFIVPLVTRFMGLYPQLRIDIELSNRQLDLVHEGLDLAIRLGRLQDSRLVATRLAPRRMYLCASPSYLERYGRPHSLSELSRHNCLIGSSDIWQ LEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQLPDYYVLEHLKSGELISLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKEGLAERPEYRV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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