Pseudomonas sp. GM41(2012), PMI27_003840
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGCCTCGAAGAAGATCAGCGAGAGTTTCGGGTCCTGGCTGCCCAGCGTCATCATCAGCCGGTGCAGGTTGACCGATTCGTCGCTGTTGATCAGCTGAT GAAAGCCGCGCGCGATGTTCAACAGCACCGTTTCTACGGCAATGCCATCCGGCAATTCGAAAAACAGTGTCGGCAATTGCTCTTCGCACTTGGCCATCAC GGCGGCGGAGAACAGCGTCTCCTTGTCGTTGAAATGGCTGTAGACCGTCAGCTTAGACACACCGGCCTCGGCCGCGACGGCGTCCATGCTGGTATTCGCA TAACCCTTGCTCAGAAACAGAATTTTTGCCGCGTCGAGGATCGCCTGGCGCTTGGCCAGATCCTTGGGACGGCCAGGGCCGTTGGGTACTGAAAGATTGT TAGGCATATGCGCTTTTAATACTGGACTGGTGAGTTTGCTATTAATAACATACTGCTCAGTATAATTATTCCAAGCACCATTAGCGAAAGGTCCTTCACC
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| DNA Sequence for Gene |
>PMI27_003840
ATGTTCCGCTATGCCTTGCCCCTCGCGTTGTCAGTCAGTCTGGCGTTTTTATTGTCTGCGTGTGGTCACGAAGAGGCGCCCCAAGTCACCGTTCGCCCGG CCATGGTCGTGCAGCCAGAGCCTTCGGCCCAGGCGATGGAAAGTTTTCCCGGGGAAGTCCGCGCACGGTATGAGCCGGACCTGGCGTTTCGCATTGGCGG TAAAGTCAGTCGACGACTGGTCGAAGAGGGGCAGCGGGTCAAGGCCGACCAACCTCTGGCGGAACTCGATCCTCAGGACGTGCGCCTGCAACTGGAAGCC ACCCGTGCCCAGGTCGCTGCTGCCGAGGCCAACCTGAGCCTGGTGCGCGCCGAACGTGATCGCTACAAGACCCTGATGGACCGTCAGATGGTCAGCCGTT CGCAGTACGACAATTCCGAAAACCTTTACCGATCCGGTGAAGCACGCCTCAAGCAAATCAAAGCCGAATTCAACGTCTCGACCAATCAGGCCAGTTACGC CGTGCTGCGTGCGCCGCAGGATGGCGTGGTGGCTAAACGCGCGGTTGAAGTCGGGCAAGTGGTGGCGGCGGGGCAAACCGTATTTACCCTCGCCACCGAT GGCGAACGCGAAGTGTTGATCAGCTTGCCGGAGCAGAGCTTTGGCCGCTTCAAGGTTGGTCAGCCAGTGTCGGTGGAACTCTGGACCCAACCCGACCAAC GTTTCGCCGGGCGCATCCGTGAACTGTCGCCCGCTGCCGATCCAAAATCGCGCACCTTTGCCGCCCGCATCGCCTTCACCGCCGGCAAGGTTCCTGCTGA ACTCGGCCAGAGTGCCCGGGTGTTCGTTCAGACCTCCGATGTGGTGCCGCTGTCGGTGCCGCTTTCCGCGCTGACAGCGGAAAACGGCGCGACCTACGTC TGGGTCGTCAATGCCAACAACACCCTGAAGAAAACCCCGGTACGGGTCGGTGCCTTCGGCGAGAAAACCGTACCGGTACTCGAAGGACTGAACGCCAGCG ATTGGGTGGTGGCCGCTGGCGTCCATGTGCTGCTTGAAGGGCAGCAGGTGCGTCCGGTGGATCGCTCCAACCGCGTGGTCAATCTGGCGGACAAGGAGTA A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCCGATGGGTTTCAATCTTTCCGAATGGGCGCTGCGTAATCGCCAGATCGTACTGTTCCTGATGCTCTTGCTGGCCATTGTTGGCGCACTGTCCTACA CCAAGCTCGGCCAAAGTGAAGACCCGCCGTTCACCTTCAAGGCCATGGTGATTCGGACCAACTGGCCGGGGGCCACGGCGCAGGAAGTGTCGCGCCAGGT CACCGAGCGTATTGAAAAGAAACTGATGGAAACCGGCGAGTACGAACGCATCGTTTCGTTCTCCCGTCCGGGCGAATCCCAAGTGACGTTCGTTGCCCGT GATTCCATGCACTCGGTGGAAATCCCGGACCTCTGGTACCAGGTGCGCAAGAAGATCAACGACATTCGTCAAACCCTGCCACCGGGCATCCAGGGGCCAT TCTTCAATGATGAGTTCGGCACGACGTTTGGCAATATCTACGCCCTGACCGGCGAAGGTTTTGATTACGCGGTGCTCAAGGACTACGCCGACCGCGTGCA
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| Amino Acid Sequence |
>RND transporter
MFRYALPLALSVSLAFLLSACGHEEAPQVTVRPAMVVQPEPSAQAMESFPGEVRARYEPDLAFRIGGKVSRRLVEEGQRVKADQPLAELDPQDVRLQLEA TRAQVAAAEANLSLVRAERDRYKTLMDRQMVSRSQYDNSENLYRSGEARLKQIKAEFNVSTNQASYAVLRAPQDGVVAKRAVEVGQVVAAGQTVFTLATD GEREVLISLPEQSFGRFKVGQPVSVELWTQPDQRFAGRIRELSPAADPKSRTFAARIAFTAGKVPAELGQSARVFVQTSDVVPLSVPLSALTAENGATYV WVVNANNTLKKTPVRVGAFGEKTVPVLEGLNASDWVVAAGVHVLLEGQQVRPVDRSNRVVNLADKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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