Pseudomonas sp. GM41(2012), PMI27_004812
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGACGGCCAACCCGCAAGCCCGGCCCGCAGTAACGAAGAAAAACTCAGGCAGGAGCAAACGCGCACCAGCGCCCACAGCGTTTTGCTTGCCGTCCCCGA ACAACTGCTGAGTCGGTTGATGCTCGCAGCCCAGGCCGGCGTGTTGCGCCTGGCCGTACGCAGCGCCGATGAAAAACGTCTGGCTCGTTACTGGGCCGGC GAAAGCTATTCATCGGCCAACCTTGCCAGTACCAACCGCGACTTGATCCAGTTCAGCCAACTGGCCATGACGCCCCCACCCAAACCTGTCGTCACCCACG GCGGCACAGCACCGCGCAAGCCGAGCGTGGAAGTCATCCGCGGCATCGAAATCACCCAACAAACCCCCTGAATCGAGCAAGGACGCCTCTCAATGCGCAG TCGCTCCATGCCCCTGTTTCAAGCGCAACGATGACCCGAACTGGTATCACCTGTACTTCCTCGAAAACTGCAACTTCGATAAACGCAGCGGATTATCGCA
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| DNA Sequence for Gene |
>PMI27_004812
ATGAGCCAGAACCTGAGCCAGACCTTCCTCGCGATCACGCGCAACAGCACCGACCTTGAGTGGCTGCAAGGTGCCCTCGCCCCGTTGGGCCAAGTGGTCA GCGCCGGCAGTGGCAGCCTCGACGAATTGCTGGCGCTGGTGGACGTGACCTTCGCCAGCCTGGTGTTCATCGGCCTGGACCGCGAACACGTGGTGGCCCA AAGCGCACTGATCGAAGGTGCCCTGGAAGCCAAACCGATGCTGGCGATCGTCGCGCTGGGCGATGGCATGGACAACCAACTCGTGCTCAATGCCATGCGC GCAGGGGCACGGGATTTCGTTGCCTATGGTTCGCGTTCAAGTGAAGTCGCGGGGTTGGTGCGACGGCTGGGCAAACGTCTGCCGCCCGTGGCCCCGAACA CCCAACTGGGTAGCCTGACGGTGCTCTATGGTGTGCAGATCAACGCCGACGGTGCGCTGCTCGCCACGCACCTGGCGCAAGTGGTGCAAAAGAGCGGGCA GCAAACGCTGTTGCTGGACCTGGGCCTGCCACGCGGTGACAGCCTGGCCTTGCTCGGGCTGGAGAGTTCGTTCCACTTCGGCGATGCACTCAGGCACTTG CGGCGCCTCGACGCGACGCTGATCGACAGCGCGTTCACCAACTGCGCCGCCGGGTTGCGGATCCTCGCCTACGCCAACCACGATGAGCCGCTGGAACACA CCAGCACCGCCGAGTTGTACATGTTGCTCAGCGCCCTGCGCCAACACTTCCAGCACATCGTGGTGAACCTGACTGGTCAGCCGGACAGCGAAGCGCTACG CACCTTCGTCACCCATTGCGACAAGTTGCTGTGGTACACCGATCAGAACGTACTCGACTGCCGCCGTAACCTGGCGGTACTCAACCTGTGGCGTGAAAAA GGCATGAAGCTCGATCACGCCAGACTGCTGGTGGATCGCTACCTGCGCAACGTCGCACCGGACTCCGAGACCCTGAGCAAAAGCTTCGGCATGGAGATCA TCGCGACCCTCGTCTACAGCCCGGAAGTGCGGCTCAACGCCAAGAACCAAGGTGTGACGCTGTTTGAACTGGCCCCCCGCGAAGGCCTGACTCAAAGCCT GCGCGCCCTCGGCGATCAATTGGCCAAGCGTTCCGAGGGCCTGGCCAAGCCCAAGTCTGGCTGGTTCAACCGGTTGAGGGGTGCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGTGAAAAACTCTTCGGTGCCCCTGTACGCACCACCACTGGCAACACCGACCACGAAGGTCTGAAACTGGTGCTGCACCGCTACATCATCGACGCCAT CGAGGAGTCCGGCAAAAACCTGCTGGAGGGTTCACGGCAGGTGCTCTCACAGTTCGTCATCGACAAGGTTGCCGAGTACATCGCCCGGCTGCACCTGGCG ATTTCCCGCTATGAAATGGAGCGTCTGGCCGAAGAAATCGTCGACGAACTCACCGGTTTCGGCCCCTTGGAAGTGCTGCTGCGGGACCCGGCGGTGACGG AGATTCTGGTCAATGGCCCGCACCGGGTGTTCATTGAACGCGACGGCATACTGCATCTAAGCGACCTGCGCTTCATCGATGCGCATCACGTCGAACGGGT TATGCAACGGATCCTCGCGCCCCTCGGCCGACGGCTCGACGAGTCGTCGCCAATGGTCGACGCACGACTGCCCGACGGTAGCCGGGTCAACGCGATCATT
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| Amino Acid Sequence |
>Flp pilus assembly protein, ATPase CpaE
MSQNLSQTFLAITRNSTDLEWLQGALAPLGQVVSAGSGSLDELLALVDVTFASLVFIGLDREHVVAQSALIEGALEAKPMLAIVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVAGLVRRLGKRLPPVAPNTQLGSLTVLYGVQINADGALLATHLAQVVQKSGQQTLLLDLGLPRGDSLALLGLESSFHFGDALRHL RRLDATLIDSAFTNCAAGLRILAYANHDEPLEHTSTAELYMLLSALRQHFQHIVVNLTGQPDSEALRTFVTHCDKLLWYTDQNVLDCRRNLAVLNLWREK GMKLDHARLLVDRYLRNVAPDSETLSKSFGMEIIATLVYSPEVRLNAKNQGVTLFELAPREGLTQSLRALGDQLAKRSEGLAKPKSGWFNRLRGAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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