Pseudomonas sp. GM41(2012), PMI27_004919
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTGAAACAGTTTCCTGATAAAAGGATTGCCTCATGGCTCTCGACGTTCAAGAAAAAGCTCAAATCGTAGCTGACTACCAGCAAGCTGTTGGTGACACTG GTTCGCCAGAAGTGCAAGTTGCACTGCTGACCCACAACATCAACAAGCTGCAAGGTCACTTCAAGGCCAACGGTAAAGATCACCACTCCCGTCGTGGTCT GATCCGCATGGTAAACCAGCGTCGTAAGCTGCTGGACTACCTGAAAGGCAAGGATCTGGGTCGTTACCAGACTCTGATCGGTCGCCTGGGTCTGCGTCGC TAATAAGCGATTGCGCTAGAGGTTGGTTGTCTGTCGTACGTCAGTGGGTTTCCCGCTGGCGCATGGCAGGCTCCCAGCCTCAAGTTTTATCTGGATACCT GCTTTACCTGGACAATGACAGTCGGGCCGATTCCCGGCGTTGCCCAAGAATTTCGCAAGAAGACAAGTTCCCCAAGAGCCACAAAAGAAGGTAGGACACC
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| DNA Sequence for Gene |
>PMI27_004919
GTGAACCCGGTAATCAAAAAATTCCAGTTCGGTCAGTCGACCGTTACCCTCGAGACTGGCCGTATCGCCCGTCAGGCCTCCGGCGCAGTATTGGTCACCG TTGACGACGACGTCAGCGTATTGGTGACTGTGGTCGGCGCCAAGCAAGCCGATCCAGGCAAGGGCTTCTTCCCTCTGTCTGTTCACTACCAGGAAAAAAC TTACGCTGCCGGTAAGATCCCTGGCGGTTTCTTCAAGCGTGAAGGCCGTCCTTCCGAGAAAGAAACCCTGACTTCCCGACTGATCGACCGTCCGATCCGT CCGCTGTTCCCAGAAGGCTTCATGAACGAAGTGCAGGTTGTCTGCACCGTCGTTTCCACCAGCAAGAAGACCGATCCGGACATCGCTGCGATGATCGGTA CCTCGGCTGCGCTGGCCATTTCCGGCATTCCTTTTGATGGCCCGATCGGCGCTGCCCGCGTTGCGTTCCACGAAAGCACCGGCTACCTGCTGAACCCGAC TTACGAACAACAGAAAGCTTCGAGCCTGGACATGGTCGTTGCCGGTACTTCGGAAGCCGTGTTGATGGTTGAATCGGAAGCCAAAGAGCTGACCGAAGAC CAGATGCTGGGCGCGGTACTGTTTGCTCACGACGAGTTCCAGGTGGTGATCAACGCCGTTAAAGAACTGGCCGCCGAAGCTGCCAAGCCGACCTGGACCT GGGCTCCTGCGCCTGAAGCCACTGCTCTGCTGGGCGCTATCCGTGCCGAGTTCGGCGACGCGATCTCCCAGGCTTACACCATCACCATCAAGGCCGACCG TTACGCTCGTCTGGGCGAACTGAAAGACCAGGTGGTTGCCAAGTTGTCCGGCGAAGAAGGCCAACCGACTTCCGCTGAAGTCAAAGCTGCTTTCGGCGAA ATCGAATACCGCACCGTTCGCGAAAACATCGTTAACGGCAAGCCACGTATCGACGGCCGCGACACCAAGACCGTACGTCCGCTGAACATCGAAGTTGGCG TTCTGCCGAAGACTCACGGTTCGGCTCTGTTCACCCGTGGCGAAACCCAGGCCCTGGTTGTTGCAACACTGGGCACCGCCCGTGACGCACAGCTGCTGGA CACCCTGGAAGGCGAGAAAAAAGACCCGTTCATGCTGCACTACAACTTCCCTCCGTTCTCGGTAGGTGAGTGTGGTCGCATGGGTGGCGCTGGTCGTCGC GAAATCGGTCACGGCCGTCTGGCCCGTCGTTCGATTGCAGCCATGCTGCCTGCTGCCGACGTGTTCCCGTACACCATCCGTGTTGTGTCGGAAATCACCG AGTCCAACGGTTCGAGCTCCATGGCTTCGGTCTGCGGCGCTTCCCTGGCTCTGATGGATGCCGGCGTTCCGATGAAGGCACCGGTTGCCGGTATCGCCAT GGGTCTGGTTAAAGAAGGCGAGAAATTCGCCGTCCTGACCGACATCCTGGGTGACGAAGACCACTTGGGCGACATGGACTTCAAAGTAGCGGGTACCGCC AAAGGTGTGACCGCGCTGCAGATGGACATCAAGATCAAAGGCATCACCGAAGAAATCATGGAGATCGCTCTGGGCCAAGCCCTGGAAGCGCGCCTGAACA TCCTCGGTCAGATGAACCAGATCATTGGCCAGTCGCGTACCGAGCTGTCGGAAAACGCTCCGACCATGATCGCGATGAAAATCGACACCGACAAAATCCG TGATGTCATCGGTAAAGGCGGCGCGACCATTCGTGCGATCTGTGAAGAGACCAAGGCTTCGATCGACATCGAAGACGACGGTTCGATCAAGATCTTCGGC GAAACCAAAGAAGCTGCTGAAGCTGCACGTCAGCGCGTTCTGGGCATCACCGCAGAAGCTGAAATCGGCAAGATCTACGTCGGTAAGGTTGAGCGCATCG TCGACTTCGGCGCATTCGTCAACATCCTGCCTGGCAAGGACGGTCTGGTTCACATCTCGATGCTGAGCGACGCTCGCGTAGAGAAAGTGACCGACATCCT GAAAGAAGGCCAGGAAGTGGAAGTACTGGTACTGGACGTGGACAACCGCGGCCGTATCAAGCTGTCCATCAAAGACGTAGCAGCAGCCAAGGCTTCGGGC GTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCACTCCCCACGCCTGACCGCTTCAACGTTATAAAAAATGCCCCGCAGTGAAAGCTGCGGGGCATTTTTTTGTCTGCGAAACAGGGTGTGAAGTTGCTGG TCTTCGAACCCGGTGCTAGGTTTAGCCCACCGCCCGTGTAGCTCAGTTGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGACTCCTGTCTCG GGCACCATCCCTCTGTTATTTCACCTTTCTGCTCAGGTCATCCACTGCACGTTTGAGTTGATCCAGCTGATTGTCCTGATTGCTGACTTCACGCTTCAGG CTGGACAGGTCGCTAGAGCTTGAGCTGGAACTCGATCCGGCACTGCGCTTGAGGTCTTCAACCTGGCTGGCGAGCCTTTTCAGGTCACTGTCCTGTGCGC TGACAATACGCTTGAGGTCGCTCACTTCGCTGGAGCTGGAACTTGAACCGGAGTTCGAACTGCTGCTGCGCTTGAGATCGTCCATTTGACTGGCGAGCTT
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| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIR PLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVVAGTSEAVLMVESEAKELTED QMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPAPEATALLGAIRAEFGDAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQPTSAEVKAAFGE IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRR EIGHGRLARRSIAAMLPAADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDMDFKVAGTA KGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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