Pseudomonas sp. GM41(2012), PMI27_005250
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCATCCGGGCCAACTCTCCGGTGGTCAGCAACAGCGTGTGGCGATTGCCCGTGCGCTTGCGATGGACCCGATCGTCATGCTGTTCGACGAACCGACTT CGGCGCTGGACCCGGAAATGGTCAACGAAGTACTCGACGTGATGGTGCAACTGGCCCACGAAGGCATGACCATGATGTGCGTGACCCACGAAATGGGCTT CGCCCGTAAAGTGGCGGACCGGGTGATCTTCATGGACCAGGGCAGGATCATCGAAGACTGCAAGAAAGAGGAGTTCTTTGGCGACATCAACGCCCGCGCC GAGCGTACGCAGCACTTCCTCGCCAAGATTCTGCAGCACTAAAAGCTACACGGCCGCCCCTGTAGGAGCTGCCGCAGGCTGCGATCTTTTGATCTTGATT CTTGCAGAACCCCAGGAGATCAAGAGCAAAAGATCGCAGCCTTCGGCAGCTCCTACGGGAGTTCCTCAGGGCTTGTAGTGGTTGACCCAAGGCATCTGTG
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| DNA Sequence for Gene |
>PMI27_005250
ATGAAATGCGACACCAATCTCTATCGCGCCGCGCCGCCATCACTCGCCGTGAAACCCCGTCTGATTCGCCATCTGTTCCTGCCGCCGCTGGTCATCGCCC TGATGATCGGATTGGGTTACCTCGGCTTCTGGGTCAGTGAACACTACGGGATTCGCAGCCTAAGCGAGAACGGCCAGCGTCAGCTGGAACTGCACGCCCG TGCCGTCGAGAGCGAGATCAGCAAGTACACCTACCTGCCCAGCCTGCTGGAACTCGAATCCAGCGTTTCGAAGCTGTTGGCCGATCCGTCGCCGGAACAC CGACAGACGGTCAATGAATACCTCGAAGGCCTGAACCGGCGCAGCCGCAGTCGGGCTATCTACGTGATGGACACCACTGGCCGTGTCATGGCCACCAGCA ACTGGCGCGATGTCGACAGTTACCTGGGCGAAGACCTGTCCTTCCGCGCCTATTTCCAGAATGCCGTGCGCGGTCAGCCGGGGCGCTTCTATGGCATCGG CAGCACCAACGGCGAGCCCGGTTATTACCTGGCTCATGGCCTGGAAGAACACGGCAAGATCATTGGTGTCGCGGTGGTCAAGGTCCGCCTCGAAGCCATG GAAGAACGCTGGCAGCGCGCGCGGCTGGAAGCGTTCGTCAGCGATGAAAACGGCATCATCATTCTTTCCAGCGATCCGGCACGGCGCCTGAAATCGGTTG TGCCGCTGAGCGACGAGACCAAGGAAAAACTGGCCCGCAGCCTTCAGTACTACTGGTTCCCACTGAACGAACTGCAACCGCTGGCCCGTGAACAACTGGC CGAAGGCGAGGAAAAACTGACCTTCCCCGCCAACAGCGAAGTGGAATCAGATGAAGAGGACATCAGCTACCTCTCGCAAACCCGGCCATTGAGCGATACC CCGTGGAATTTCACCCTGCTCACCCCCCTGCAGGATTTGCGTCGCGAAGCGATCAATCAGGGGATTCTGGTGGCGGTGGCGTTTGCCCTCGTGGCGTTCC TGCTGATCGCCTGGAACGAGCGGCGCAAGGTCATTGCCACGCGCCTCGCTGCCCGGGAAGCCTTGCAGGAAGCCAACAATCAACTGGAGCGTCGGATTAC CGAACGCACCACCGACCTGCGCGCCAGCAACGAACGGCTCAAGGGCCAGATCCGCGAACGACGTGTGGCTGAAGAGACGCTACGCCGTGCCCAGGATGAA TTGGTGCAGGCCGGTAAACTCGCGGCCATCGGCCAGATGTCCACCAGCATCGCCCACGAATTGAACCAGCCACTGGCGGCGCTGCGGACCTTGTCCGGCA ACACCGTGCGGTTTCTGGAACGCGGTCAACTGGACGTTGCCAGCACCAACCTCAAGACCATCAACGAACTGATCGACCGCATGGGCCGGATCACCGCCAG CCTGCGTTCGTTCGCTCGCCGCGGTGACGACAAAGGTCAGGCCAGCCTCGGCAAAGCGGTGGATGCAGCCTTGCAGCTGCTCGGTGGGCGCGTGGAAAGC GCGCATCTGCAACTGCACCGCGACTTCGCCGATGTGCAGGTGCAGATTGACCAGACCCGTCTGGAGCAGATTCTGGTCAACCTGATCGGCAACGCCCTCG ACGCCATGCAGGCGCAGCCTCTGCCAGAACTGTGGCTCGAAGGCGAAGAGTACGATGGCAAATATCGCCTTCGTGTACGCGATAACGGCCACGGCATCGA CGCCGAAGCGCGCAAGCATTTGTTCGAACCGTTCTTCACCACCAAACCCGGCGAACAGGGCCTGGGCCTTGGCCTGACCCTTTCCGCCAGCCTCGCCGCA GCCACCGGCGGGCACCTGGGTGTCGAGCACCCGGCCAGCGGTGGTACCACTTTCGTCCTCAGTTTACCGTTGGTAAGCCCCACTCACGCCGAGCCAATAT GA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACAACGACCTTAGTGTGCTGATCGTCGAAGACGACCCCCATGTGCTGCTCGGCTGCCAACAGGCGCTGACCCTGGAAGACATTCCCTGCGTGGGCGTCGG CAGCGCCGAAGAAGCGCTGGAGCGGGTCGGCGACAACTTCGCCGGCATCGTCATCAGCGACATCCGCCTGCCGGGTATCGACGGTCTGGAATTGCTGACC CGTCTCAAGGCCCGCGACCGCAGCCTGCCGGTGGTGCTGATTACCGGTCACGGCGACATTTCCATGGCTGTCGGTGCGATGCAGAAAGGCGCCTATGACT TCATGGAGAAACCTTTCTCCCCCGAACGTCTGGTCGATGTGGCGCGCCGTGCGCTGGAGCAACGCAGCCTCGCGCGGGAAGTCTCTTCGTTGCGTCGGCA ACTGGCGGAACGGGACTCTCTGGAAGGCCGGATCATCGGCCGCTCGCCCGCCATGCAGAACCTGCGGGAATTGATCGCCAACGTTGCCGATACCTCGGCC
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| Amino Acid Sequence |
>sensor histidine kinase
MKCDTNLYRAAPPSLAVKPRLIRHLFLPPLVIALMIGLGYLGFWVSEHYGIRSLSENGQRQLELHARAVESEISKYTYLPSLLELESSVSKLLADPSPEH RQTVNEYLEGLNRRSRSRAIYVMDTTGRVMATSNWRDVDSYLGEDLSFRAYFQNAVRGQPGRFYGIGSTNGEPGYYLAHGLEEHGKIIGVAVVKVRLEAM EERWQRARLEAFVSDENGIIILSSDPARRLKSVVPLSDETKEKLARSLQYYWFPLNELQPLAREQLAEGEEKLTFPANSEVESDEEDISYLSQTRPLSDT PWNFTLLTPLQDLRREAINQGILVAVAFALVAFLLIAWNERRKVIATRLAAREALQEANNQLERRITERTTDLRASNERLKGQIRERRVAEETLRRAQDE LVQAGKLAAIGQMSTSIAHELNQPLAALRTLSGNTVRFLERGQLDVASTNLKTINELIDRMGRITASLRSFARRGDDKGQASLGKAVDAALQLLGGRVES AHLQLHRDFADVQVQIDQTRLEQILVNLIGNALDAMQAQPLPELWLEGEEYDGKYRLRVRDNGHGIDAEARKHLFEPFFTTKPGEQGLGLGLTLSASLAA ATGGHLGVEHPASGGTTFVLSLPLVSPTHAEPI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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