Pseudomonas sp. GM41(2012), PMI27_005231
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGAATCAGCTGACGGCGGCGCGGCAGGATTATCGGTATCTGGATGATCAGCGGCTGCGGTTGCCGGGGGAGATTGTTGAGCATGCTTGTGGATTGCGGG AGCTGATGATTCCTTCGCGCTAGGAAATATGCGGGGTGTCAGTTCTAACCACCCCTCACCCTAACCCTCTCCCCAAGGGGTAGAGGGGACTGACCGAGGT GATGCAAAGCTCTACATCGACCTGAATAACCGAGTCGAACTCAGGATTTGAAAAGCATGGAGATCTGCCCCCTTTCCCCTCTCTCCCGGAGGGAGAGGGG ACTGACCGAGGTGATGCAAAGCTCTACATCGACCTGAATAACCGAGTCGAACTCAGGATTTGAAAAGCATGGATATCTACCCCCTTTCCCCCTCTCCCCC GTGGGGAGAGGGCTGGGGTGAGGGGTGGCTTTTGAAGTAGACGTAAATTTTTGCCGAACTCGGCTCTGCCATAAATCTAATAAATTCGGAGTAGTCGCTC
|
|
| DNA Sequence for Gene |
>PMI27_005231
ATGGCTCATTTGCAACGCACCCTGTCATTGGGGTCGGTGGTGCTGTTCGGCATCGCCTACATGACGCCGATCATCGTGCTCGGCACCTTTGGCATCCTCG CTCAATCCACCGCCGGTATGGTCCCGGCCGCTTACCTGGCGGCGCTGGTGGCGATGTTTTTCACCGCCATGAGTTACGGCCGAATGGCCTCGGCGTTTCC TGTCGCTGGCTCGGCCTATAGCTATGTCCGCAAGGCGATCAGCCCGAAACTCGGTTTCATCGCCGGTTGGGCCGTGCTGCTCGACTACCTGTTCCTGCCG ATGGCGATCTGGCTGATCGGCGCGGCCTACCTCAACTCCGCGTTCCCGGCCGTGCCGCAGTGGATCTGGGTGCTGGCGTTCATCGGCATCACCAGCGCGA TCAACATCGTCGGTCTGAAACTGGCCAACGGCATCAACGCGTTACTGATGCTGGTGCAGTTCCTGGTGCTGATCGCCTTCGTTGCGCTGTGCGTTCATTA CGTCGGTGGTGATGCGAGCACGCCGTTGTGGTCGGTCAAACCGTTCTTCAACGGTGACATGCAGATGCCGCTGATCATGAGCGGTGCAGCCATCGCCTGT TATTCATTCCTCGGGTTTGACGCGGTCAGCACCCTGACCGAAGAAACCCGCGACCCGCGCCGCACCATCCCGCGAGCGATCATGCTGATCACCCTGATCG GCGGGTTGATCTTCGTCGGTGTGTCGTACTTCGTGCAGATCGCGCATCCGTCGTTCCAGTTCGACAGCGTCGACTCGGCGGCCTATGAAATTGCCCGCAA CATTGGTGGTGACCTGTTCGTGTCGATCTTCCTGATCGGCCTGATCGTCGGCCAGTTTGCGTCGGGCCTGTCGGCTCAGGCCAGCGGCTCGCGGTTGTTG TTCGCCATGGGCCGTGATGGCGTGCTGCCAAAATCGTTCTTCGGCACCTTGCATGAACGCTTTGGCACGCCGGTCAACAGCATCCTGCTGTGCGCCGTGG TCGCTTTGCTGGCGCTGAAACTGGACGTCACCACCTCAACCTCGTTCATCAACTTCGGCGCGTTCCTGGCGTTCAGTCTGGTGAACCTGTCGGTGATCTT TCACTACTGGATCGGCGGTGAGCACAAAGGGATGCGTGAATTCGTGTTGTTCCTGCTGTTCCCGTTTATCGGTCTGGCGGCGGATTTGTGGCTGATGGTC AGCCTCGATCACCTGGCGATCTATCTGGGATTGAGCTGGCTGGCGATTGGCGTGGTGTACCTGGCGGTGTTGACCGGCGGCTTCCGTCGCCAGCCACCGG AGATGGATTTCCAGGAAGCCACCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCCCACCCCTGTAGGAGCAAAGCTTGCTCGCGATCGCAGTGTGTCAGTCGACATTAATAGTGACTGACACACCGCGATCGCGAGCAAGCTTTGCTCCTA CAGGGGGTTCAGAGTTTGGATTGGTGAATCGGCAACTGGACCCGAAACGTGGTTCCCACGCCCACTTCACTGCGCACCGTAATATCCCCCCGGTGTTTTT TCACGATGCCATAGGACAGGGACAACCCCAGCCCCGTCCCCTGGCCCACCGGTTTGGTGGTGAAGAACGGGTCGAAGATTTTTTGCAGGCAGTCCGGCGC AATACCGGCGCCGGTGTCTTCGACCTCGATCCACACCGTTTCCGCTTCAAGCCCGGTGCGCAAGGTGATGGTGCCGCGCTCCGGACCGATGGCCTGAGAG GCGTTGACGATCAGGTTCATGATCACCTGATTGATTTGCGAAGGCAGGCATTCGATGTCGGGCAACGCCTGATATTCCTTGAGCACATCGGCCTTGTACT
|
|
| Amino Acid Sequence |
>amino acid permease
MAHLQRTLSLGSVVLFGIAYMTPIIVLGTFGILAQSTAGMVPAAYLAALVAMFFTAMSYGRMASAFPVAGSAYSYVRKAISPKLGFIAGWAVLLDYLFLP MAIWLIGAAYLNSAFPAVPQWIWVLAFIGITSAINIVGLKLANGINALLMLVQFLVLIAFVALCVHYVGGDASTPLWSVKPFFNGDMQMPLIMSGAAIAC YSFLGFDAVSTLTEETRDPRRTIPRAIMLITLIGGLIFVGVSYFVQIAHPSFQFDSVDSAAYEIARNIGGDLFVSIFLIGLIVGQFASGLSAQASGSRLL FAMGRDGVLPKSFFGTLHERFGTPVNSILLCAVVALLALKLDVTTSTSFINFGAFLAFSLVNLSVIFHYWIGGEHKGMREFVLFLLFPFIGLAADLWLMV SLDHLAIYLGLSWLAIGVVYLAVLTGGFRRQPPEMDFQEAT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|