Pseudomonas sp. GM41(2012), PMI27_005492
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCCCGACTTCGGTCGGGCTTAGTTGTGTCTGGGGGCATCGAAAAGTGACTCAAAACACAACATGTAGTGAAAAACGCAGTTTTTTGGCTGTTTTTTGA ACAAAAAAATGGCTAGCCGAAATTTATGAAAAAAAATCTTCACTCCCGACATCCAGCCAAAGCCCTATAAACCCTCGCTCCGACCGAAAAACCCTCCTTC TCGACCGCTGCATGCGCGGATTCGCCCCACCACGGCAGCAAAAATTTCCCTATAATGCCGCCTTAAACGGGCCTGCAATATTCCCTTACAGGGATAACAG CCAGTCTGAAGCCCACGCTGAAGTCTTCACCGATTTCTGCGCCCGTCAGAGGCTCTCGGAACCCCGTACAAATTTATGTTTATTTGCCTGCGTGTACCGC TGCAAAGAACGCTATCCAACGCGGCCAGTACGGCCGTGTGAAAAACCAACCTATCAGTTTTCACACGGGCATCTGGCCCTCACGCAGGAGACGACACGTC
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| DNA Sequence for Gene |
>PMI27_005492
ATGCTGAGCTGGGACGAATTCGACAAAGAAGACAGCGGCGAAACCGTTGTAAAAGGCGCCAACGCCGGGCACGCAACTGAAGCCAACATGGACCGCCTCG ACACCGCTGGTGGCGTCGCGGCTCAAGAAGCCCGCGCTGTAACCGCGTCCGACTCCGCCGCAATCGCCCGTGCAAAAGCTGCCCTGGACAACCTCGACAT CGCCGAAGGCCTCGCCGAACTCGAAGGCGCCTCCGCCCGTGTGGCCGTCGACGAAAAGCGCATGATCAACTGCCGCGCCGACCTTAACCAACTCGTACCC TTCAAGTACGACTGGGCCTGGCAGAAGTACCTGGACGGCTGCGCAAACCACTGGATGCCGCAAGAAGTCAACATGACCGCCGACATCGCCCTCTGGAAAG ACCCGGAAGGCCTGACCGACGACGAGCGCCGCATCGTCATGCGCAACCTCGGCTTCTTCTCCACCGCCGACTCCCTGGTTGCCAACAACCTGGTGCTGGC CGTGTACCGCCTGATCACCAACCCGGAATGCCGCCAGTACATCCTACGCCAGGCCTTCGAAGAGGCGATCCACACCCACGCCTACCAGTACTGCATCGAA TCGTTGGCCATGGATGAAGGCGAGATCTTCAACATGTACCACGAGATCCCATCGGTCGCGAAAAAAGCCACCTGGGGCCTCAAATACACCCGCTCGATCT CCGATCCGAAGTTCGAAACCGGCACCGTCGAAACCGACAAAGAGCTGCTGCGCAACCTGATCGCCTACTACTGCGTTCTGGAAGGCATCTTCTTCTACTG CGGCTTCACCCAAATCCTCTCCATGGGCCGTCGCAACAAAATGACCGGCGTCGCCGAGCAGTTCCAATACATCCTGCGCGACGAATCCATGCACCTGAAC TTCGGCATCGACGTGATCAACCAGATCAAAATCGAAAACCCACACTTGTGGGACGCTGAAATGAAGGAAGAAGCTTCGCAGATGATTCTGCAAGGCACTC AGCTGGAAATCGAATACGCGCGTGACACCATGCCTCGCGGCGTGTTGGGCATGAACGCGGCGATGATGGAGGACTACCTGAAGTTTATTGCTAACCGTCG GTTGTCGCAGATTGGTTTGAAGGAAGAGTATCCAGGGACGACTAACCCGTTCCCTTGGATGAGCGAGATTATGGACTTGAAGAAAGAGAAGAACTTCTTT GAGACTCGGGTTATTGAGTATCAGACTGGTGGGGCGTTGAGCTGGGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCCTGAGCTTGCCGCGATTTGACGATGTAAATCGACAAATCAAAATACTAAAAGCCCCGATCTGATCGGGGCTTTTTATTGGGTGGGAAAAGTCTTACT TCTTTCGACGCTCACCGCCAATCCTCCTACAGCAACTCCAGATTTTTCTGCATTGATGACTCTTAAAAGCGCCTCTAAGCTCTATTGCAGGTGCCTAAGA AACGCCCAACGTAGAAGCTAATTCCCTCACACAGTACGCGTGCTGATTTCAGCGATGTATGCGCAATCCTGTGAGTGAGAGAAACGGCTCGTTGGGATTT CTTAGATCCTCTACGTTGGGTTCCGGCCCTCTTCAACTTCACACGTAGAGGTAATGGATATGCCTACACAAATCCCACATCGTTCGGTCATGACTGATCC TTTCAACCCGACAATCTTCACTCGCCATAACCTCTCCCTCCACGCACTCCTGCTGGAAAACCAACCATGGTTCTGCGCCCGCGATCTAGGTCGCTTATTG
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| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit beta
MLSWDEFDKEDSGETVVKGANAGHATEANMDRLDTAGGVAAQEARAVTASDSAAIARAKAALDNLDIAEGLAELEGASARVAVDEKRMINCRADLNQLVP FKYDWAWQKYLDGCANHWMPQEVNMTADIALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCIE SLAMDEGEIFNMYHEIPSVAKKATWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLN FGIDVINQIKIENPHLWDAEMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFF ETRVIEYQTGGALSWD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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