Pseudomonas sp. GM41(2012), PMI27_005416
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCGCGCCAGGCGCAGGTGCCGATCATCATGCTCACGGCCAGCTCCGACGAGGCCGACCGCGTCATCGGTCTGGAATTGGGCGCCGACGATTACCTCGGC AAACCCTTCAGCCCGCGTGAATTGCAGGCGCGCATCAAAGCCCTGTTGCGTCGCGCGCAGTTCGGTCAGGAACGTTCCGGCAGTGAAGTGCTGGCCTTCG ATGACTGGCGGCTGGACATGGTCAGCCATCGCCTGTTCCACATCGACGGCGAAGAAGTGATTCTCTCCGGCGCCGATTTCGCGCTACTGAAACTGTTCCT CGATCACCCCCAGGAAATCCTCGATCGCGACACCATCGGCAACGCCACCCGTGGCCGTGATTTGATGCCGCTGGATCGCATCGTCGACATGGCCGTCAGC CGTTTGCGCCAGCGCCTGCGCGACACCGAAAAACCGCCGCGACTGATCCGTACCGTGCGCGGCAGCGGCTACCAACTGGCCGCCAATGTGGTTGCCAGCA
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| DNA Sequence for Gene |
>PMI27_005416
ATGGCCACTGAGTTTTTCCGCAAGCTCGCCGCACGGATTCCCGTGCCGCGCTCGCTGCTCGGGCGGATGCTGCTGCTGACGTTGCTGGCAGTGTTGTTCG CCCAGACGCTGTCGAGCGTGATTTGGGTCTCGCAACTGCGCGCCACCCAACTTGAAGGCCTGGTGACCAGTGCTCGTAGCCTCGCTCATTCGATGACGGC CAGCGTCAGTTACTTCCGCTCTCTGCCAGTAGCGTTTCGGCCATTGGTACTCGACCAGTTGCGCAGCATGGGCGGCACCCGTTTTGTGGTGACGCTCAAC GACAAACCCTTGGGCATGGAAGTGCTGCCGATCACCCCGCGCAAGGAAGCCGTGCTCAAAGCGGTGGACGAAGTGTTGCGCCAGTCCCTGGGCCAGGACA TTGATATCTCGGTGACCTTCGTCAGCCCCGAAGACCTGCGGATCTTCAACGGTGGCCTGAAGCTCGATGAATTGCCGCGCTCCTGGGCGCATTACGCGCT GACCCTGGAGCCGGTAAACCCGCCGGTATTGGTTACGCAAATCCAGATGGCGCCGGGCGAGTGGTTGTACATCGCCTCACTGTTGCCCGAGCCCTACACC AGTCTTGAAGAACAAGGCCTGCCGGCGCAGCAAGTCTGGTTCATCGTGCTCACCAGCGGCTTCTTGCTGTTGTTCATTGGCCTGCTGGTGCACTGGCAGA GCCGGCCGCTCAAGCGTTTGGCACGGGCAGCACGGGACATGTCCCTCGGCGCGGAAGTCGAACCCGTGGCCGAGGGTGGCGGTAGTGAAGTGATCGAGGT CGGCCGCGCCTTCAATGCGATGCGCGAACGCATCAGCCGTTACCTGACCGAGCGTAGCCAGTTGTTCAGCGCGATTTCCCATGACCTGCGCACGCCGATT ACCCGCTTGCGGTTACGCGTTGAATTGCTCGAAGACGAAACGCTGCAAGCCAAGTTCGGCCGTGATCTGGATGAGCTGGAGCTGCTGGTCAAAGGCGCGC TGCAATGCGTGAAAGACACCGACATCCACGAAAACATCGAACCGGTGGACCTCAACCATGTACTAGATTGTCTGGTGGAGCCGTACCTGGCGCCCAACGG CAATGGTCGCGTTACTCAGCAAGGGCGTGCGCTGGCGGCGTATCCGGGGAAGCCGCTGGCGCTCAAGCGTTGCATCGGCAACCTGATCGACAATGCCTTG AAGTATGGGCAGAAAGCGCATTTGCACATTGATGACGACCAGAGTGCGTTCATCCTGCATGTGGACGATGAAGGGCCGGGCGTACCGGAGCAGCGGATGG AGCAGGTGTTCGAGCCGCACTTCCGTCTGGCCGGGCAGCAGCAGGGTTATGGGTTGGGGTTGGGGATTGCGCGAAATATTGCGCATAGCCATGGCGGTGA GGTCAGCCTGCAGAATTTGCGTGAGGGTGGGTTGAGGGTGACGTTGCATTTGCCTCGGTCGATTGATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTTTCGATATTTGCGTCTGGCTTGAAATCGACTCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACTGACCGAGTTGTTTAAAAGAAATTCGGC GACCTGAAATTCCGAGTCGAACTCAGGTTCTGAAAAGCGTGAAGATCTGCTCCCTTTCCCCCTCTCCCCCGTGGGGAGAGGGCTGGGGTGAGGGGTGGCT CTTTGTCACAATCCAGTGACAAAACCTGCCCCCTTCGTTACAAGCCCACCACCGCCCGTTGTTTAGACTGCCCTCAGTCATAACAACAAAAAAAGGCACC CCATGGACACCTTCCAACCCGCTTTCAGCAGTTGGCTGAACGCCCCCGCCCATCAGCAATGGCTTGCCGCCGAAGGCCTGCGCCTGCTGGCGTTTGCCAA GGCTTCAAAGCTTCCTGAAGGTTTCGGCAATCTTGATGAAAAGGGCTGCCTGCCAGCCAACACCCACGCCGAAACCATGAACACCGCGCGGATGACTCAC
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| Amino Acid Sequence |
>sensor histidine kinase
MATEFFRKLAARIPVPRSLLGRMLLLTLLAVLFAQTLSSVIWVSQLRATQLEGLVTSARSLAHSMTASVSYFRSLPVAFRPLVLDQLRSMGGTRFVVTLN DKPLGMEVLPITPRKEAVLKAVDEVLRQSLGQDIDISVTFVSPEDLRIFNGGLKLDELPRSWAHYALTLEPVNPPVLVTQIQMAPGEWLYIASLLPEPYT SLEEQGLPAQQVWFIVLTSGFLLLFIGLLVHWQSRPLKRLARAARDMSLGAEVEPVAEGGGSEVIEVGRAFNAMRERISRYLTERSQLFSAISHDLRTPI TRLRLRVELLEDETLQAKFGRDLDELELLVKGALQCVKDTDIHENIEPVDLNHVLDCLVEPYLAPNGNGRVTQQGRALAAYPGKPLALKRCIGNLIDNAL KYGQKAHLHIDDDQSAFILHVDDEGPGVPEQRMEQVFEPHFRLAGQQQGYGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLHLPRSID
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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