Pseudomonas sp. GM41(2012), PMI27_005305
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 261 | 281 | - |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 255 | 411 | 8.63E-37 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 427 | 662 | 7.9E-77 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 422 | 677 | 4.8E-103 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 422 | 682 | 3.6E-103 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 421 | 667 | 5.0E-124 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 239 | 411 | 4.6E-39 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 426 | 676 | 1.15E-93 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 250 | 407 | 1.9E-35 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 248 | 409 | 4.0E-28 |
| Coils | Coil | Coil | - | - | 415 | 435 | - |
| PANTHER | PTHR33121 | CYCLIC DI-GMP PHOSPHODIESTERASE PDEF | - | - | 179 | 677 | 0.0 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 428 | 667 | 6.47912E-114 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 251 | 409 | 2.4497E-36 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 249 | 419 | 1.2E-43 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.