Pseudomonas taiwanensis DSM 21245, H620_RS0116260
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taiwanensis DSM 21245 H620DRAFT_scaffold00030.30_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCTTGGCGGCTGGCTTGGCAGCGACGGACTCGACGGCCGGCTCTGCAACCGCCTTGGCAGTTTTGCGCAGCTCGGCCAGCGACGGGCTCTTGCTCTTCG GCGCGCTAGCCGCGCCAGATTTGTCCAGCGAACGCTGGCAAGACTTGCAGGATACGTCCTCGGTCACGGCAGTGCTGACAAGGGTCTGACTGCTGCGCCC GCAGGCGGAATCGAGGCCATTGGTGGAATAGTGGGTAACCAAAACCGAACATCTCCGATGCGTTGTCATTGAAGCGGCCGGCATTCTCGCACAGGTTGCA GGGGCTTGCCGAACCCCCCCAGCGGGCGACGACCGTCGGCACAGGACAGCAGCGCTGGCACTTTGCCATAATGATTGGCATGCTAGCCCCTTTCCGGTGT CCCGCCGTATAGTGCGCCACGCCAGCACGGCCACGGCCTTGCGGCACACACCGTGCATGATCAAACCCTGCCATCGCCAGCCCAATTGCAGGACCACCGC
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| DNA Sequence for Gene |
>H620_RS0116260
TTGACCGATCTCACACACTCGCCCTCGCTGCGACCTGCCTCCTCCGCTCCGGCTGCGTCCGTGCGCGGCTCGGTCAAAGGTGCGCTGGCCCTGCTGGCCC TGGTTCTGCTGGGTTTGCTGCTGTGGCAGCTGTTCGCCCAGTTCCATCACACGCAGGCGGAGCTGCGTCAACAAAGCCTGGCGACCAGTGCCGACCTGGC GGACCACCTGGGCCTGAACATGGCGCTCAAAGCCCAGGAGGCTGTGAATGTGGTCCAGCCCTATGTCAAAACGCCGATGCCCGCAGCACTGCCCAGCCTG CTGCAAACCCTGCGCGAACGCCTGCCCGAGCTGCGGGAACTGGCCTGGCTCGATGCTGCCGGTAACGTGCGCGGCGACAGCCTGGCGGGCAGCCCAGACC GCCAGTGGATTGACGAGCTGGTCGAACTGGCCAAGGGCCGCGCCTACTTTTTCTCCAACTCGGACGATAACCGTACCGTCTACCTGCTGTTGCGCCAGTC GACCGAGCAGGATCGCGGTTACTGGCTGCTGCGCCTTGCGCCCTCCTACTACAGGACCCTGACGATTCACCTCGATGGCGTAAGCCACCCCTTGTGGCTG CTGGAAAACAGCCGCAGCGGCGATATGCTGGAGCGCCATGCCCCGGTGCAAACCAGCAATGAGCCGTTGCAAAGCGTCATGCTGGCTTTCATCGACAACA GCGCATGGCAGTTGCGCGGGCTGTTCGATGCCGGCCTGGCCCGGCAGAAGCTGCTGCCGGCGCTGATCGGCAAATGCATGCTGGTGCTGTTCTGCGCGCT GCTGCCGGTGCTGGCATTGATCAACATGCGCCGACGCCAGCAGGCCCTGCAGGAGGACCGCCGCCGCTACCAGGACATCTTCGAGGGCACGGGCGTGGCC TTGTGCGTGCTCGACCTCTCCAGCCTGCCCGGCCAGCTCGACCGCTACCACCTGCGCAACCTGGCCGCGCTCAAGCAAAGCCTGGCGCTGGACCCGAACC TGCGCCGCGCCCTGCTGCTGGAACTGAAAATCACCGAAATCAACCAAGTGGCGCGCCAGTTGCTCAATGTCGACTGCAACGAAGGCGCCTGGCAGCGCCT GATCGACGGCAGCGGCGATGGCCGCGACAGCGTTGGCATGCAACTGATCGACGCGCTGATCGAACAGCGCCCTGTGCTGGAACTCGAAGTCCGCCTGCCC GCCCCGCTCGGTGGAGAACTGCACCTGTGGCTGATGGCCCGCCTGCCGCAGCAGCGGCGCAACTACCAGGCGGTCATCCTCAGCATCAGCGACATCACCA GCCGCAAGCAGGTAGAGCTGTCGCTGCTCGAACGCGAAAGTTTCTGGTCGGACGTGGTACGCACCGTACCCGACCAACTGTATGTGCAGGACGTCTTCAA CAAGCGGATGATCTTCAGCAACCGCCACCTCGGCCAGACCCTGGGCTATGACCGCAGCGAGCTGGCGCAGATGGGCGACCGCTTCTGGGAGCTGCTGCTA CACCCCGAAGACGCCGAACACTACAAGGCACTGCTTCAGCATCAACGCGAGACCGGCCACAGCGAGTCGCTGCATTGCCAACTGCGCTTCCGCCACCGCG ACGGCAACTGGCGCTGCTATGAGATTCGCGAACAGGTGCTGACCCGCGACGCCGATGGCGTCGTCACCCGTATCATCGGGGTGGGCAAGGACGTGACCGT GCAGATCGAGGCCAGCCAGTCTCTGCGCGACAGCGAACAACGCTACCGCATGCTCGCCGAGAGCATCAGCGATGTGATCTTCTCCACCGACAGCCAGCTG CAGCTCAACTACGTCAGCCCGTCGGTGCATGCCGTGCTGGGCTACCGGGCCGAGTGGATCTTCGAGAACAGCTGGCAGTCGATCGTCGCCAACCCGGCCC AGCTCACCGGCATCTATAGCCTGATGGAACGGGTCAGCAAAGCCATGGGCGACCGCGAACAGCTGGCGCAGCTGCGCAGCCAACTGCCCTCCCAGCTGTT CCTGTTCGACTGCCTGCGTGCCGATGGCCGCAAGATTCCCATCGAACTGCGCCTGGTACTGGTGTGGGACGAGCACGAGCGCTTCGAGGGGGTACTGGGG GTTGGCCGCGACATCAGCCAGCAGCGCCGCGCGGAAAAAGACCTGCGCATGGCCGCCACGGTATTCGAGCACTCGACTTCGGCCATTCTGATCACCGACC CGGCCGGCTACATCGTCCAGGCCAACGAAGCGTTCAGCCGCGTCAGCGGCTATGCGGTGGAGGAAGTACTCGACCAACTGCCCGGCATGCTGACCGTCGA TGAGCAGCAGGAAGGCCACCTTGCCTACGTGCTCAAGCAATTGCACCAGCGCGGCAGTTGGGAAGGCGAAGTGTGGCTCAAGCGTCGCAATGGCGAGCCG TACCCGGCATGGGTCGGCATCACCGCCGTGCTCGACGACGAAGGCGACCTGGCCAGCTACGTGTGCTTCTTCACCGACATCAGCGAGCGCAAGGCCAGCG AGCAACGCATTCATCGCCTGGCCTACTACGATGCCCTGACGCACCTGCCCAACCGCACGTTGTTCCAGGACCGCCTGTACAACGCGCTGCAGCAGGCCGA TCGGCAGAAGGCCTGGGTGGTGCTGATGTTCCTCGACCTGGACCGCTTCAAGCCGATCAACGACTCCCTCGGCCACGCCGCGGGCGATCGCATGCTCAAG GACATGGCCCTGCGCCTGCTGGCGTGCGTCGATGACGACGACACCGTGGCGCGCATGGGCGGCGACGAATTCACCCTGTTGCTGCAACCGCGCGCCACCC GTGAAATGGCGCTCAACCGCGCCATCCACGTGGCCGAAAACATCCTCGCGAGCCTGGTGCGGCCGTTCGTGCTGGAAAACCGTGAGTTCTTCGTCACCGC CAGTATCGGTATCGCCCTCAGCCCGCAGGACGGCAGCGAACTGAGCCAACTGATGAAGAACGCCGACACGGCCATGTACCACGCCAAGGAGCGCGGCAAG AACAACTTCCAGTTCTACCAGGCCGAGATGAACGCCAGTGCCCTGGAGCGCCTGGAACTGGAAAGCGACCTGCGCCATGCCTTGGAGCAGAACGAATTCA TTCTGTACTACCAGCCGCAGTTCAGCGGCGACGGCAAGCGCCTGACCGGTGCCGAAGCGCTGCTGCGCTGGCGCCACCCCACCCGTGGCCTGGTGCCGCC GGGCGATTTCATTCCGGTGATCGAGGAGCTGGGCCTGGTGGTGGATGTGGGTGACTGGGTGCTGCGCGAGGCCAGCCGCCAACTGAAGGCCTGGCACAAG GAGAAAGTCCGTGTGCCGAAGGTGTCGGTGAACATTTCCGCACGGCAGTTCTCCGACGGCCAACTGGGCACGCGCATCGCCACCATTCTGGAAGAGACCG GCCTGCCGCCGGCGTGCCTGGAGTTGGAGCTGACCGAAAGTATCCTGATGCGCGAGGTCAACGAGGCGATGCAGATTCTCGACAGCCTCAAGAACCTTGG CCTGAGCATTGCCGTCGACGACTTCGGCACTGGCTACTCGTCGCTCAACTACCTCAAGCAGTTCCCCATCGACGTGCTGAAGATCGACCGCACCTTCGTC GATGGCCTGCCCGAAGGCGAACAGGATGCCCAGATCGCCCGGGCGATCATCGCCATGGCCCATAGCCTCAACCTGGCGGTGATCGCCGAAGGCGTGGAAA CCCATGAGCAGTTGGAGTTCCTGCGTGAGCACGGCTGCGACGAAGTGCAGGGCTACCTGTTCGGACGGCCGATGCCGGCCAACCAGTTCGAGGCGCAATT CAGCAACGAAACGCTGTTCATGTTCCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGATGCCAGCACAGAGGCGGCGGGAAACGGACTTTCGAGTCAACTCACGCCCCCAGCCAGCCCAGACACGGCGCGGGATCCAACATGAAGGCCATTGG TCCGCGACTTGATGCCACTTCATATGCCAGGCGCGAATCAATCGGTTAGAATGCCCCCCCAATTCACCCCGATCCTTGAGGACCGCCATGTTCAGCCGTG ATTTGACCATTGCCAAGTACGACGCCGAGCTCTTCGAAGCCATGCAGCAAGAAGCTCTGCGCCAGGAAGAGCATATCGAGCTGATCGCTTCGGAAAACTA CACCAGCCCGGCAGTCATGGAAGCCCAGGGCTCGGTCCTGACCAACAAGTACGCCGAAGGCTACCCAGGCAAGCGCTACTACGGTGGCTGCGAATACGTC GACGTGGTCGAGCAACTGGCCATCGACCGTGCCAAGCAGCTGTTCGGCGCCGACTATGCCAACGTCCAGCCGCACGCCGGTTCCCAGGCCAACGCTGCCG
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MTDLTHSPSLRPASSAPAASVRGSVKGALALLALVLLGLLLWQLFAQFHHTQAELRQQSLATSADLADHLGLNMALKAQEAVNVVQPYVKTPMPAALPSL LQTLRERLPELRELAWLDAAGNVRGDSLAGSPDRQWIDELVELAKGRAYFFSNSDDNRTVYLLLRQSTEQDRGYWLLRLAPSYYRTLTIHLDGVSHPLWL LENSRSGDMLERHAPVQTSNEPLQSVMLAFIDNSAWQLRGLFDAGLARQKLLPALIGKCMLVLFCALLPVLALINMRRRQQALQEDRRRYQDIFEGTGVA LCVLDLSSLPGQLDRYHLRNLAALKQSLALDPNLRRALLLELKITEINQVARQLLNVDCNEGAWQRLIDGSGDGRDSVGMQLIDALIEQRPVLELEVRLP APLGGELHLWLMARLPQQRRNYQAVILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVFNKRMIFSNRHLGQTLGYDRSELAQMGDRFWELLL HPEDAEHYKALLQHQRETGHSESLHCQLRFRHRDGNWRCYEIREQVLTRDADGVVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLAESISDVIFSTDSQL QLNYVSPSVHAVLGYRAEWIFENSWQSIVANPAQLTGIYSLMERVSKAMGDREQLAQLRSQLPSQLFLFDCLRADGRKIPIELRLVLVWDEHERFEGVLG VGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVEEVLDQLPGMLTVDEQQEGHLAYVLKQLHQRGSWEGEVWLKRRNGEP YPAWVGITAVLDDEGDLASYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQADRQKAWVVLMFLDLDRFKPINDSLGHAAGDRMLK DMALRLLACVDDDDTVARMGGDEFTLLLQPRATREMALNRAIHVAENILASLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGK NNFQFYQAEMNASALERLELESDLRHALEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHK EKVRVPKVSVNISARQFSDGQLGTRIATILEETGLPPACLELELTESILMREVNEAMQILDSLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRTFV DGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLFGRPMPANQFEAQFSNETLFMFQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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