Pseudomonas taiwanensis DSM 21245, H620_RS0114740
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taiwanensis DSM 21245 H620DRAFT_scaffold00025.25_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CACCTGTCGAAGAGGTGCTGGTGATCAGTGTCATCTCCCGTGACGAAGGTGGTTTCAAGGGGCCGGCGCTGCTGCAGAACATTCTCGAGAGCGGCCTGCG TTTCGGTGAAATGGATATTTTCCACCGTCACGAAAGCATGGCCGGTCACGGCGAAGTGCTGTTCTCGATGGCCAACGCGGTCAAGCCAGGCGTCTTCGAC CTGGACGACATCGACCACTTCAGCACCCGGGCCGTGAGTTTCTTCCTCGGTCTGCCAGGCCCGCGCCATCCAAAGCAGGCCTTCGATGTGATGGTGGCCG CGGCACGCAAGCTGGCCCATGAGCTCAATGGCGAGCTCAAGGACGACCAGCGCAGCGTGCTGACCGCCCAGACCATCGAGCACTACCGCCAGCGTATCGT CGAGTTCGAGCGCCGTGCGTTGACTCAGAAGCGCTGACAGAAGGATCCAAACGAAAGAGCAGCCTGTTGGCTGCTTTTTTGCTTTGCAAGAGAGCCAAAA
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| DNA Sequence for Gene |
>H620_RS0114740
ATGACTGCCGAAACCCGAATTCTCGAACTGCGAGCCGAGCTCGATCAGCACAACTACCGCTATTACGTGCTCGACGAGCCAAGCATCCCAGATGCCGAGT ACGACCGCCTGTTCAACGAACTCAAGGCGCTGGAGGCCGAATACCCGCACCTGGTGACGCCCGACTCGCCGACCCAGCGTGTCGGTGGTCATGCCTTGGC GGCATTCAGCCAGGTCCGTCACGAAGTGCCGATGCTCAGCCTCGGCAACGCCTTCGACGAGGCCGATCTGCGCGAGTTCGGCCGGCGCGTGGCCGAAGGG CTCGATCAGTCCGGTGCGGTCGATTTCAGTTGCGAGCCCAAGCTCGATGGCCTTGCGGTCAGCCTGTTGTACCGTGATGGCCAGTTGGTGCAAGGCGCGA CCCGAGGTGATGGCACCACCGGCGAGGACATCAGCGCCAACGTGCGCACCGTGCGGAATATCCCGCTCAAGCTCCAGGGCCAGGGGTGGCCTGCCGTGCT TGAAGTGCGCGGTGAGGTGTACATGAGCAAGGCCGGGTTCGACCGGCTCAACGCTGTCCAGGCCGCTGCTGGCGGCAAGACCTTCGCCAACCCACGCAAC GCGGCGGCCGGCAGCCTGCGTCAGTTGGACCCGAAGATCACTGCCAGTCGCCCGCTGGAATTCTGCAGCTATGGCGTGGGGCAGGTCTCCGAGAGCATCG GCGAAAGCCACATTGGTATCCTCGAACAACTCAAGCAATGGGGCCTGCCGATCAGCCGCGAACTCAAGCACGCGGCGGGCATCGAAGAGTGCCTGGCCTA TTACCACGACATCGGTGAGCGGCGTAGCAGCCTGGCCTACGAAATCGACGGCGTGGTGTTCAAGGTCAACAGTCTGGCCGCGCAGCGCGAGCTGGGCTTC CGCGCCCGAGAGCCGCGCTGGGCCGTGGCCCACAAGTTCCCCGCCATGGAAGAGCTGACCGAAGTGCTGGATGTCGAGTTCCAGGTCGGTCGTACCGGAG CGGTCACTCCCGTGGCACGCCTGAAGCCGGTCAAGGTCGCCGGCGTGACCGTGTCAAACGCCACCCTGCACAACATGGATGAAATTGCGCGCTTGGGGCT GCGTATCGGTGACACGGTGATCATTCGCCGCGCCGGTGACGTTATCCCGCAGGTGATGCAGGTGGTGCTCGAGCGTCGTCCCGAAGATGCCCGTCCGGTG GAGGTGCCTAGCGAATGTCCGGTGTGCGGCTCGCAGGTCGAGCGCACCCAGTTGGTCAAGCGCAGCAAGGGCAAGGAAACCACCAGCGAGGGCGCGGTGT ATCGCTGTGTCGGTCGCCTGGCCTGCGGTGCCCAGCTCAAGCAAGCGATCATTCACTACGTGTCCCGTCGCGCCATGGACATCGACGGCCTGGGTGAAAA GAGCGTCGAGCAGTTGGTGGATGAGGGGCTGATCGGCTCGCCGGCGGACCTGTACAAGCTGGCGTTCGAGCAGATCGTTGGTCTGGAAGGTTTCGCTGAG GTCTCCAGCAAGAAGCTGCTGGACGCCATCGAGGCCAGCAAGCGCCCGAGCCTTGCACGCTTCATCTATGCCTTGGGCATTCCGGATGTGGGCGAGGAGA CCGCCAAGGTCCTGGCTCGCTCGCTGGGCAGCCTGGCGCGGGTTCAGAAGGCGCTGCCGCAGGTGCTGACCTACCTGCCGGACATCGGGCTCGAAGTGGC CTATGAGATTCATAACTTCTTTGAAGACGACCACAACCGCAAGGTCATCGAGCAACTGTTCGCCAGCGGCATGCAGTTGCAGGACGAGGGCGAGGTGGCA GCGGAGTTCGCGGCCAGCACCACCTTGGCCGGCATGATCGCCAAGCTCGATATCGCCTCGGTCGGCCCGACGGGGGCGGAAAAGCTGGTGGCCAAGCTCG ACAGCCTGGACAAGATCATCGAAGCCGACGGCATCGACTTGCGCCAGGTCTTGAACACCAAGCAGGCCGATGCGGTGCGCGAATTCTTCCGCGACGAGGC CAACCAGAAGCTTGCACGGGCTCTCGAGGCTCAGTTGCTGGAGTTCGGCATGCACTGGAGCAATGAGAAAAAAGTTGCCGAAGGGCTGCCGCTGGCCGGT CAGACCTGGGTGCTGACCGGGACCCTGGAGCGCATGAGTCGCGACATCGCCAAGGAAAAACTCGAAAGCCTGGGCGCCAAGGTAGCCGGCTCGGTGTCCG GCAAGACCCATTGCGTGGTTGCCGGTCCCGGTGCCGGTTCCAAGCTGGCCAAGGCCAGTGAGCTGGGGGTGAGGGTGCTGGATGAGGATGCATTTGTTGC GTTCTTGGCCGATCAGGGTATTGCTATCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGCCTGCCGTGATCCTGGGGCGTCGCGGCCCGTGTAGCGGCCGGCTTAGCGGCGACGAGTCAGGCGCGTCAGGACAAGTCATTGAGAAATGATGACTTT TTCTCGCCGCAGAGGTTGTAAGTTCGCCCCAGACCGGTACAATGGCGCGGCTCGTCACATGGCGAGCCGCGTAGTGGTGGCCCCATCGGTCCCCCCGCAT TGATTAACCGTTAACCCGGTCAGGCCCGGAAGGGAGCAGCCGTAGCGGTGACATCGAGTGCCGGGGTGTGGCTGGTGGGGCCGCCTCCATTACGCAAGTC CTTGAATTCTCAAGGATTTCTCGCTCCAGCATCCCCAGAGTCGAACAACGTATTGGTACGCCCCAGTGGTGGTCGCTGAGCGGCTGCTATCGCCTGTGCG TCGCGATAGGTTGCGTGGTTGATTTAGATCAGTTTCGGGTGTGCGGCCAGGATTAGATTGGACAGTGGCGCTCCACTCCCTACCCTGACCTTGCGCGCAA
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MTAETRILELRAELDQHNYRYYVLDEPSIPDAEYDRLFNELKALEAEYPHLVTPDSPTQRVGGHALAAFSQVRHEVPMLSLGNAFDEADLREFGRRVAEG LDQSGAVDFSCEPKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGQGWPAVLEVRGEVYMSKAGFDRLNAVQAAAGGKTFANPRN AAAGSLRQLDPKITASRPLEFCSYGVGQVSESIGESHIGILEQLKQWGLPISRELKHAAGIEECLAYYHDIGERRSSLAYEIDGVVFKVNSLAAQRELGF RAREPRWAVAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPV EVPSECPVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGSPADLYKLAFEQIVGLEGFAE VSSKKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLARSLGSLARVQKALPQVLTYLPDIGLEVAYEIHNFFEDDHNRKVIEQLFASGMQLQDEGEVA AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIEADGIDLRQVLNTKQADAVREFFRDEANQKLARALEAQLLEFGMHWSNEKKVAEGLPLAG QTWVLTGTLERMSRDIAKEKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVRVLDEDAFVAFLADQGIAI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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