Pseudomonas taiwanensis DSM 21245, H620_RS0114460
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taiwanensis DSM 21245 H620DRAFT_scaffold00024.24_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCTGCACGACATGTCGCAGCTCAGCGATGCACTGTCCGCCGAATCTGCCCCGGCAGCGCGCCAGCAAGCGCCCAATGCTCCCGTGGTCAAGAAACTGG ACGGCCAGTTGATCAAACTGCCCGGCTATATCGTGCCGCTGGAAGTCAGCGAAGAAGGCCGCACCACCGAATTCCTGCTGGTGCCTTACTACGGCGCCTG CATACACGTGCCGCCTCCGCCCTCGAACCAGATCGTGCATATTTTCAGTGAGATGGGCGTACGCGTCGAAGACCTCTACCAGCCCTACTGGATCGAGGGA AAGATGCAAGTTAGAGCCTCCAGCAGCGAGCTGGCCGATGCCGGATACCAGATGGAAGCCGAGAAAATCTACGCTTATGAGCTGAAGTGAGAACTGTTTC GAAGTCGTACACACGCTTCGTTGAGCTGGGTCAAACTTTCTGTTTATGTGTCTTCGTACCATTGGACTTCACAAAATTTTCACGTCCTTTGGGAGCTTCC
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| DNA Sequence for Gene |
>H620_RS0114460
ATGAACAAGTCCTTGCTCGGCGCCGCACTCGTTGCCTTGGCGCTCGCAGCCCCTGTTGCCAACGCCCACCAGGCGGGTGATTTCATCATCCGCGCCGGTG CCGCCACGGTAGATCCGAACGAAGACAGCGGCGCACTCAAGCTCGATGGCGCAAAGGTTTCGGGCACCAAGGCTACCCTGGACAGCGACACCCAGTTGGG CCTGACCTTCGCCTACATGCTCACCGACCACATCGGCGTCGAGCTGCTGGCCGCCACCCCGTTCAACCACACCGTGGCCGTCAAAGGCCTTGGCCCGGGC CTGGACGGCAAACTGGCCGACATCAAGCACCTGCCACCGACCCTGTCGTTGCAGTACTACCCGATGGCGCCTACTTCGAAGTTCCAGCCGTACGCCGGTA TCGGTATCAACTACACCATGTTCTTCGACGAAGACCTCAGCGGTGCACGCAAACAGCAGGGCTTCAGCAACCTGAAGCTGCAGGATTCGGTGGGCCTGGC CGGCCAGTTGGGCATGGACTACATGCTGACCGATAACCTGCTGTTCAACGCCTCGGTCTGGTACATCGACCTCGACACCAAGGCGACCGTCGATGGCCCC AACGCCCTGGGCGTTGGCAAGACCAAGGTCGACGTGGACGTAGACCCTTGGGTGTACATGGTCGGTCTCGGCTACAAGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCAGGTCGCGATACTGGCGGGGGCCTTGCGCCCCCGCTGTGCTGTGGGCTTATTGCCGGCAAACCGGCTTTCTGCAGGTGACGGGCGATAACCCTTGGA TTATCTCAGCCTTTACCCAGAAGCTGGGCCAAGCCCTCGACCATCGAGGTCGGCTGTGGGAATTGGAACCGCGCCAGCAACCGCTGGTTATCCGCCCGAG AATGGCGAATGTCACCCGACCGCGCCGGCCCGTAGCTGATAGCTGGCAAGCTGCCCACCACCGTCTCCAGCGCCTTCAACAGCTGGTTCAGCGAAGTCGC CTGGTTCAGACCGATATTCACAGCCCCCTCTTCCGCTTGCGGCTTTTCCAGTGCCTGCACCATGACCTGTACCAGGTCCGCCACATAGAGAAAATCGCGA GTCTGCTCACCATCACCGAACACAGTGATCGGCAGGCCCTGGGTCGCTCGTTCGCAGAAAATGCTGATCACACCGGAGTAGGGCGAGGACGGATCCTGCC
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| Amino Acid Sequence |
>OmpW family protein
MNKSLLGAALVALALAAPVANAHQAGDFIIRAGAATVDPNEDSGALKLDGAKVSGTKATLDSDTQLGLTFAYMLTDHIGVELLAATPFNHTVAVKGLGPG LDGKLADIKHLPPTLSLQYYPMAPTSKFQPYAGIGINYTMFFDEDLSGARKQQGFSNLKLQDSVGLAGQLGMDYMLTDNLLFNASVWYIDLDTKATVDGP NALGVGKTKVDVDVDPWVYMVGLGYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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