Pseudomonas taiwanensis DSM 21245, H620_RS0111595 (rimO)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003824	catalytic activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04055	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016740	transferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_01865	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0018339	peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_01865	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0051536	iron-sulfur cluster binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04055	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0035596	methylthiotransferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00919	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0051539	4 iron, 4 sulfur cluster binding	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_01865	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0005737	cytoplasm	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_01865	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006400	tRNA modification	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00089	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
NCBIfam	TIGR00089	JCVI: MiaB/RimO family radical SAM methylthiotransferase	IPR005839	Methylthiotransferase	9	440	7.2E-102
SMART	SM00729	MiaB	IPR006638	Elp3/MiaA/NifB-like, radical SAM core domain	141	367	1.2E-50
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	382	443	1.4E-20
CDD	cd01335	Radical_SAM	-	-	145	360	1.68864E-8
Hamap	MF_01865	Ribosomal protein S12 methylthiotransferase RimO [rimO].	IPR005840	Ribosomal protein uS12 methylthiotransferase RimO	8	442	60.973587
Gene3D	G3DSA:3.80.30.20	tm_1862 like domain	IPR023404	Radical SAM, alpha/beta horseshoe	139	381	1.1E-70
Pfam	PF18693	TRAM domain	IPR002792	TRAM domain	381	441	1.5E-20
Pfam	PF04055	Radical SAM superfamily	IPR007197	Radical SAM	147	324	3.6E-27
Pfam	PF00919	Uncharacterized protein family UPF0004	IPR013848	Methylthiotransferase, N-terminal	9	90	1.2E-20
SUPERFAMILY	SSF102114	Radical SAM enzymes	-	-	110	372	9.29E-52
FunFam	G3DSA:2.40.50.140:FF:000060	Ribosomal protein S12 methylthiotransferase RimO	-	-	382	443	2.2E-25
FunFam	G3DSA:3.40.50.12160:FF:000002	Ribosomal protein S12 methylthiotransferase RimO	-	-	9	126	3.9E-54
Gene3D	G3DSA:3.40.50.12160	-	IPR038135	Methylthiotransferase, N-terminal domain superfamily	9	126	9.1E-28
FunFam	G3DSA:3.80.30.20:FF:000001	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 2	-	-	139	381	1.4E-88
NCBIfam	TIGR01125	JCVI: 30S ribosomal protein S12 methylthiotransferase RimO	IPR005840	Ribosomal protein uS12 methylthiotransferase RimO	9	439	0.0
SFLD	SFLDF00274	ribosomal protein S12 methylthiotransferase (RimO-like)	IPR005840	Ribosomal protein uS12 methylthiotransferase RimO	6	442	0.0
SFLD	SFLDG01082	B12-binding domain containing	-	-	103	363	8.1E-28
PANTHER	PTHR43837	RIBOSOMAL PROTEIN S12 METHYLTHIOTRANSFERASE RIMO	IPR005840	Ribosomal protein uS12 methylthiotransferase RimO	5	442	0.0
SFLD	SFLDG01061	methylthiotransferase	IPR005839	Methylthiotransferase	6	442	0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.