Pseudomonas taiwanensis DSM 21245, H620_RS0111090
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taiwanensis DSM 21245 H620DRAFT_scaffold00017.17_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGACTTCTGGTGGCTGCTGGGGATCATGGCGCTGTTCTCATGGCTTAGCCTGGTCGATGTGGTGCGCGCCGAGTTCCTTCGTGGGCGTAACCTTGAGTAC GTCAAGGCCGCCCGTGCCCTCGGGTTGCCCGATACCCAGGTGATGCTGCGGCATATCCTGCCCAACGCCATGAATGCCACCCTGACCTTCATCCCCTTCA TGCTCACCGGGGCCATCACCACCCTGACCGCATTGGACTTCCTTGGCTTCGGCATGCCGGCAGGGAGCGCTTCGCTGGGCGAACTGGTGACCCAGGGCAA GCAACACCTAGAGGCACCGTGGTTGGGCTTTACCGCGTTCTTCGCCCTCGCGGTGATCCTGTCGCTACTGGTGTTCATTGGTGATGCCCTGCGCGAAGCT TTCGATCCTCGCCGCTAGCGTGGCGCGGACAAGGCAGCACAGTCTTCACCCAGGCCATACCTCGCCGCATAATGCGTCTCCCCCTCAACAGGCCTCCTCC
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| DNA Sequence for Gene |
>H620_RS0111090
ATGCACGACAGCGACAGCCTCAAGGACTATCCCCAGGTAAGGCAACTGGCGATCCGCTCGCTGTTCGAGATCATCGAGCAATCCAGCGAAGGCACGGTGA TCGTCGACCGCCAGGCCCGCATCGTCTGGATGAACGAGCGCTATGCCCGGCGCTTTGGCCTGGCCGATGCCGCGAGCGCCATCGGCCAGCCGTGTGAGTC GGTGATCCCTGGCAGCCTGATGCGGGAGGTGGTCAGCAATGGCCGGCCAATCCTGCTGGACATGCTCGACACCCACAACGACCCTTTGGTGGTCATGCGC TTGCCCATCCACGATGACCAGGGCGCGCTGATCGGGGCCATCGGCTTTGCCTTGTTTGACGAACTGCGCAGCCTGTCGCCACTCCTCAAACGCTACTCGA GCATGCAGCAGGAATTGGCGTCCACCCGCTCACAGCTAAGGGCACGTCAGGCCAAGTACAGCTTCGCCCAGTTCGTCGGCAGCAGCGCGGCCAGCCTCGA GGCCAAGCGCCGGGCGCGGCGTGGCGCGAGCAGCGATTCGCCCGTGCTGTTGCTGGGCGAGACCGGCACCGGCAAGGAGTTGCTGGCCCATGCGATTCAT GCCGCCTCGGCGCGCGCGCACAAGGCGTTCGTCAGCATCAACAGCGCGGCCATTCCAGAGACCTTGCTGGAGGCCGAATTCTTCGGCACCGCCCCAGGTG CCTTCACCGGCGCCGACCGAAAGGGCCGCAGCGGCAAGCTGCAACTGGCCGAGGGCGGCACGCTGTTCCTGGACGAGATCGGTGACATGCCGCTGGCCCT GCAGAGCAAGTTGCTGCGCGTGCTGCAGGAAAAGGAATACGAGCCTGTGGGTTCGAACCAGATGCTGCGCAGCGACGTGCGGATTATCGCCGCCACCTCC ATCGACCTGCAGGCCGCCATGGACCGTGGAGCATTTCGCGCCGACCTGTATTACCGGTTGAACGTGCTGCCCATCGACGTGCCGCCATTGCGTGAGCGCC TGGAAGACTTGCCAGCGTTATGCGAAGCGATCCTGGCCGAGCTGGGCAGCCAGTACGAGTTGGAGCCCGAGGCATTGCAGCTATTGGCCCGGCACGCGTG GCCAGGAAATATCCGGGAGTTGCGCAATGTGTTGGAGCGGGCCACGTTGTTGGCCGACCAGCCGCGGCTGGGGCCTGCGGAAGTACGCTCGGCGCTGGGG CCATTGAGCCCGGTGGCGGCGGCTGTGACGCGGCAAACATACCGAGAGGCCTGTGAACAGTTCGAGCGCAAGTTGATTGGCGATGCCTTGCTGGAATGTT CGGGGAATGTGCCGCACGCCGCGAAGTTGTTGGGGCTGGGGCGCTCCACCTTATACAAGAAGATGGTGGCGCTTGGGCTTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCTCATTTTTGAGATTTTTGTCTCTATATAGGGATACCACCCCAACCGCCGGCAATCCTTCGCCTACACGACACGTGTTAGGACCCGGCGTGCCGGCGAG GGACTGCAAAGCGGGCCCAACCGTCTCAAATCAGAGACAAATACGTTATAACCACCAAATTTATCTATGTAATTCAATCACTTATAAGTTGGCACGATTC CCGCTATCCCCTGGTAACCGATAACAACAAGACCCACCCAGGAGATTCATCCCGATGACCGTGCTCATCGCACTGGCCGCCCTGGCCCTGCTGATGCTGG CCGCCTACCGCGGCTACAGCGTGATCCTGTTCGCCCCTATCGCCGCCCTCGGCGCGGTACTGCTCACTGACCCGGCCGCCGTGGCCCCCGCATTCACCGG GGTGTTCATGGAGAAAATGGTCGGCTTCATCAAACTCTACTTCCCGGTCTTCCTGCTAGGCGCGGTGTTCGGCAAGCTGATCGAACTGTCAGGCTTCTCT
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| Amino Acid Sequence |
>sigma-54 dependent transcription regulator
MHDSDSLKDYPQVRQLAIRSLFEIIEQSSEGTVIVDRQARIVWMNERYARRFGLADAASAIGQPCESVIPGSLMREVVSNGRPILLDMLDTHNDPLVVMR LPIHDDQGALIGAIGFALFDELRSLSPLLKRYSSMQQELASTRSQLRARQAKYSFAQFVGSSAASLEAKRRARRGASSDSPVLLLGETGTGKELLAHAIH AASARAHKAFVSINSAAIPETLLEAEFFGTAPGAFTGADRKGRSGKLQLAEGGTLFLDEIGDMPLALQSKLLRVLQEKEYEPVGSNQMLRSDVRIIAATS IDLQAAMDRGAFRADLYYRLNVLPIDVPPLRERLEDLPALCEAILAELGSQYELEPEALQLLARHAWPGNIRELRNVLERATLLADQPRLGPAEVRSALG PLSPVAAAVTRQTYREACEQFERKLIGDALLECSGNVPHAAKLLGLGRSTLYKKMVALGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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