Pseudomonas taiwanensis DSM 21245, H620_RS0125315 (fliA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taiwanensis DSM 21245 H620DRAFT_scaffold00012.12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCAGCGAGATCGGCGACAACCTCGACGTGCTGGTGATTGACACTGCTGCGGGTATTGGTGACTCGGTAGTCAGCTTCGTGCGCGCCGCCCAGGAAGTGC TGCTGGTGGTGTGTGACGAGCCGACCTCGATCACCGACGCCTACGCGCTGATCAAGCTGCTCAACCGTGACTACGGCATGAACCGTTTCCGTGTGCTGGC CAACATGGCGCAGAGCCCGCAGGAAGGGCGCAATCTGTTCGCCAAGTTGACCAAGGTCACCGATCGCTTCCTTGACGTCGCCCTACAATACGTCGGCGCC GTGCCGTATGACGAATGCGTGCGCAAGGCAGTTCAGAAACAGCGCGCCGTGTATGAAGCCTTCCCGCGGTCCAAGTGCGCCCTGGCGTTCAAGGCCATTG CGCAGAAGGTCGACAGCTGGCCGCTGCCGGCCAACCCCCGCGGGCACCTGGAATTCTTCGTCGAGCGTCTGGTGCAGCCCACCAGCGCAGGGCCGGTCCT
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| DNA Sequence for Gene |
>H620_RS0125315
|fliA
ATGAACGCGAGCGGTTTCAAGATGTACAGCAGGGCGTCCAAGGATGCCCAGTACGAACTGGTGGAGCGGTATGCGCCACTGGTCAAACGCATCGCCTACC ACCTGCTGGCCCGTCTGCCAGCCAATGTCCAGGTGGAGGACCTGATCCAGGCCGGCATGATCGGCCTCCTGGAAGTGGCCAACAAATACGACGCCAGCAA GGGCGCAAGCTTCGAAACCTATGCGGGTATTCGAATCCGTGGCGCGATGCTCGACGAGGTGCGCAAGGGCGATTGGGCGCCGCGTTCCGTGCACCGAAAC ACGCGCATGGTCAGTGACGCGATGCGGTCTGTTGAAGCCAGAACAGGTCGCGACGCTAAAGATCACGAAGTTGCTGCCGAACTTCAATTGAGTCTCGATG ATTACTACGGGATTTTGAACGATACCCTGGGCAGTCGCCTGTTCAGCTTCGACGACCTGTTGCAGGACGGCGAGCACGAAGGGTTGCACGAGGATGGCGC CAGCGGCCAGATCGAGCCGTCGCGCGATCTGGAGGACGAACGCTTCCAGGCTGCCCTGACCGATGCGATCGCCAACTTGCCGGAGCGTGAGCGGCTGGTG CTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGTGAGGTGCTTGGGGTCAGCGAATCGCGTGTCAGCCAGCTGCACAGCCAATGCGCGG CGCGCCTGCGCAGTCGTCTTGGGGAATGGCGGGCACGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTGGGGTCGTTGCAGTCGTTTCACGTTGTACCGAATTGATTGAATGCGTGCTCGGGGCCGAGCGCGTTTGAGACTGCTTGGAGGTCTAATTGAACAAA GACATGAAAATCCTCATCGTTGACGACTTTTCGACGATGCGGCGGATCATCAAGAACCTGTTGCGTGATCTGGGTTTCACCAATACCGATGAAGCCGACG ACGGCACCACGGCGCTGCCGATGCTCGAAAGTGGCCATTACGATTTCCTGGTGACCGACTGGAACATGCCGGGCATGTCCGGAATCGACCTGTTGCGCAA AGTGCGCGCCCATGATCGCCTCAAGGGTATGCCGGTGCTGATGGTGACCGCCGAAGCCAAGCGCGACCAGATCATCGAAGCGGCCCAGGCCGGCGTCAAT GGCTACGTGGTCAAGCCTTTCACTGCCCAAGTGCTCAAGGAAAAGATCGAGAAAATCTTCGAGCGCGTTAACGGCTGAGGCACGTAAGGGGGGCGCCATG
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| Amino Acid Sequence |
>flagellar biosynthesis sigma factor
MNASGFKMYSRASKDAQYELVERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRN TRMVSDAMRSVEARTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQIEPSRDLEDERFQAALTDAIANLPERERLV LALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGEWRAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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