Pseudomonas taiwanensis DSM 21245, H620_RS0105955
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taiwanensis DSM 21245 H620DRAFT_scaffold00009.9_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGCTCAGGTCGCTGGGTCACGGCAGCGATCGCGTCTATGTCCAGCGCCGAGGTATTGCTGGCCAGGATTGCTTCAGCTTTGAGGGTATCGTCCAGCGT GCGAAAAATCTCCTGCTTGAGGGCAAGGTTCTCGTACACCGCTTCGATCACCAGGTCGACCTGGGCGAGGTCTGCATAGGTGGTTACCTGGCTCACGCGC GCCAGGCAGGCATCGGCCTCTGCCTGGTCGATGCGACCCTTGGCAACCTGCTGCGCCCAAGTCTGCTTGAGCATCGCCAGGCCCGTCTCCGTGGCGCGCG GGTCGTTATCCAGCCACAACACGGGCAGCCCTGCACGGGCCAGGCTGATGACAATGCCGCGACCCATCGTCCCGGCACCAATCACCGCCGTCTGCTCAAC GTTATAGGGAGTATTCACGCATGACGCTCCTGATTCTCAGTGTGAAGGCATTGCCCCCACCCTAGTCAGGCGCCTACTATTTTTGAAATTTTCATTTTCC
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| DNA Sequence for Gene |
>H620_RS0105955
ATCCCATGTATTTTTCGCATGAATATTGGCAACTTCGATCTCAACTTGTTGCGCGTGCTAGACATGCTGCTGCGCGAGCAAAATGTGTCTCGCGCCGCCG AGCGCCTGGCCCTGACCCAGCCCACGGTGAGCAACGCACTGGCCCGCTTGCGCGACCTGCTCGATGACCCATTGCTGGTACGGGTTGGCCGACGAATGCG GCCTACCCCGCGCGCGCTGGCCTTGGAGGGCCCGATCCGTGCGGCCTTACAACAGATAGAGCAGACCCTTGGCGGCGGAGACAGCTTCACGCCATCGGTG AGCCACCGGCAGCTGCGCATCGCCCTCACCGACTTTGCCGAACAGCTATGCATGCCCGGGTTATTGACCACCTTGCACAACCAGGCCCCCCACCTGCGCG TGGATGTCGTGCATCTGGCGCCCAACCTGCCGGCCGAAGCCCTCGACCGGGGTGAACTGGACCTGGTACTGGGGCGCTTCGACGAAGTGCCGGCACGCTA TGAGCGACGCCACTGGCGCAGCGAGACCCTGCATGTGGCAGTACGCCAGGGACACCCCGACGTCGATGGCGCACTCGACCTGCAGACTTTCCTGGGCTTG CGTCATCTTTGGGTGCACGGCGGCCAGACCCGTGGCATGGTCGATCAGTGGCTGGGCGAGCAGGGTCTAGCCCGGCGTATCGTCTACACCACACCCAACT ATCTGCAAGCCGCACACCTTGCCGCCAGTTCTGACTTGTGTGTGGTATTGCCCACCGCGCTGGCGCGCCATTTCGCCCAGTTGCTGCCGCTGCAGGTATT CGACCTGCCCTTCGCCCTGGAACCGTTCCAGCTGGAGCTGGTGTACCTTGCCCACCGCCAGCACGATCCGGCGTTGGCCTGGCTGGTGGCCCGTATCATG GACATACGCGCCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCATCGCATCCGGGCATGGCAGGGCATACAGCAGAGGTATTGGTTAGGCGCCAAGCTCTGTCCTTAGAGTGGTCGCCCTCAAAACCACAAGGAATGCCC CATGCGCCTACGATCTCTGCCCTACCTGCTGGCCATCGCTCTGCCCTTTACCGCGCACGCCGATTCGCCCGGCAAGGACGCTACCGACCTCACCCGCCAG AGTAATCAGCAATGGCTTCAACGCCTGCCGTTCGCCGACCGTAACGACTTCGCCGATGCTCGCCGCGGCTTGCTCGAAGCCGTGGACCAAGCCGTAGTCA CTGCCGATGGCAAAACCGTCTGGGACCTGCAGCGCTATGCATTTCTCAACGGCGAGGCACCGGCCACGGTCAACCCGAGCCTGTGGCGTATCGCCCAGCT CAATACCATCGCAGGCTTGTTCAAGGTCACCGAGGGCATCTACCAGGTACGTGGCCTTGACCTGGCCAACATGACCCTGATCGAAGGCGAGCACGGCCTG
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MPCIFRMNIGNFDLNLLRVLDMLLREQNVSRAAERLALTQPTVSNALARLRDLLDDPLLVRVGRRMRPTPRALALEGPIRAALQQIEQTLGGGDSFTPSV SHRQLRIALTDFAEQLCMPGLLTTLHNQAPHLRVDVVHLAPNLPAEALDRGELDLVLGRFDEVPARYERRHWRSETLHVAVRQGHPDVDGALDLQTFLGL RHLWVHGGQTRGMVDQWLGEQGLARRIVYTTPNYLQAAHLAASSDLCVVLPTALARHFAQLLPLQVFDLPFALEPFQLELVYLAHRQHDPALAWLVARIM DIRAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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