Pseudomonas taiwanensis DSM 21245, H620_RS0103775 (ligD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006310	DNA recombination	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003910	DNA ligase (ATP) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
NCBIfam	TIGR02777	JCVI: DNA ligase D, 3'-phosphoesterase domain	IPR014144	DNA ligase D, 3'-phosphoesterase domain	5	160	3.7E-73
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	184	205	-
Pfam	PF13298	DNA polymerase Ligase (LigD)	IPR014144	DNA ligase D, 3'-phosphoesterase domain	38	141	1.6E-39
Pfam	PF04679	ATP dependent DNA ligase C terminal region	IPR012309	DNA ligase, ATP-dependent, C-terminal	412	508	8.1E-25
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	30	-
CDD	cd04862	PaeLigD_Pol_like	IPR033651	LigD polymerase domain, PaeLigD-type	552	776	1.15538E-115
Gene3D	G3DSA:3.30.470.30	DNA ligase/mRNA capping enzyme	-	-	235	350	6.5E-45
Gene3D	G3DSA:3.30.1490.70	-	-	-	224	391	6.5E-45
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	19	-
CDD	cd07971	OBF_DNA_ligase_LigD	-	-	396	513	1.511E-53
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	395	516	8.3E-38
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	396	514	6.85E-30
CDD	cd07906	Adenylation_DNA_ligase_LigD_LigC	-	-	211	394	4.71781E-80
NCBIfam	TIGR02776	JCVI: DNA ligase D	IPR014143	DNA ligase D	222	805	0.0
NCBIfam	TIGR02779	JCVI: non-homologous end-joining DNA ligase, ligase domain	IPR014146	DNA ligase D, ligase domain	213	514	4.1E-109
NCBIfam	TIGR02778	JCVI: non-homologous end-joining DNA ligase, polymerase domain	IPR014145	DNA ligase D, polymerase domain	536	777	5.0E-88
Gene3D	G3DSA:3.90.920.10	DNA primase, PRIM domain	-	-	542	822	2.5E-96
SUPERFAMILY	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain	-	-	211	393	1.01E-45
PANTHER	PTHR42705	BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD	-	-	242	818	2.5E-105
Pfam	PF01068	ATP dependent DNA ligase domain	IPR012310	DNA ligase, ATP-dependent, central	215	393	1.0E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.