Pseudomonas taiwanensis DSM 21245, H620_RS0102780
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taiwanensis DSM 21245 H620DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCGCTCCTTCATCTCGCGGGCGGCCTTGTTGGTGAAGGTCATCGCCACGATGTACTGGGCGCGGATGCCGCAGTTCTGGATGAGGTGGGCAATCTTGCG CGTGATCACGCTGGTCTTGCCGGAGCCAGCACCGGCGAGCACCAAAAGAGGGCCGCCGACGTAGTCTCGGGCTTCTTGTTGCCGGGGATTGAGTCGGGAC ATGCTAGAAACCGGGGGTCGCCAGAAAATAGCCGCGCATTCTAACAGGCATGGGGCAGTTGTGGCGCGACCGTCTGACGTCTGAGTCAGACTTTTGTCTC TCGCTACTATTAGTCAGACTCATGATATCCAAGAAAAAAATCGGATTTGCTGGTTTAGCGAGTTTCGCGCAGGATGCACGTCAAAATGCGTCGGGGAGCA CTGCAGGCAAGGATATGTCTAAAAGTGAAAATCGTTTTCATTTATGCAGTAGCATATCCGGCCTCATACGCTTCACTGTCCAAGCCTTTAAGGAGCCCGC
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| DNA Sequence for Gene |
>H620_RS0102780
TTGTCCACGCCTGTCGAACCTTTGCGTTTGCTGTTGTTGGCTGATGAGCCGGAATGGGCTGCCCTGTTGCGCGACTGCCTGCTGCCCTTGGGCGGCAGCG CCGTATTGCTGACCGCACCCAGTTGGGAGGCTGTCGACACCCTGTTCAACCAAGACCGCCAAGCGGTGGTGCTGGCTACCCCGGCCTTGCAACCCGCGCC GGGGCGTTGCGAACTCCCCACCATCTTGCTGCTTGAGCATGAGCCTGACTCACCACCGACGGCTGTCAGCGATTGGTTGGTGCGCGATCAACTCAGCGCC GACGCCATCCGCCGATCCTTGCGCCATGTGCGTGAGCGCGGCGTACTGGTGGCCACCCTGCAGCGCCTGGCCGAACAAGACCCGCTTACCGGCATCGCCA ATCGTCAGGGCTTCCAGGCCTTACTGACCGCGCGCCTGGCCGAGAATGACGGGCGCGGTCTGGCGCTTGGCCACCTGGACCTCGACAATTTCCGCCACGT CAACGATGCCCTTGGCCACCAGAGCGGCGACCGGTTGATCTTGCAGGTGGTGGCCCGGCTGAAGCAGCAACTGGAAGCGGGGGACCAGCTGGCACGTCTG GGCAGTGACGAATTCGCCCTGCTGATCGACACCCGACGCGATGCCAACCGCGCCGAATGGATGGCCGAACGGATCGTCGAAGCGCTGGCCGAACCCTTCT GGATAGACGGCGAGAGCCTGCTGCTGGGCTGCAGCCTGGGCCTGGCCCATGCCCGCGCTCAGGCTGGGCCAGACCCATTGATGTGGCATGCCCACATCGC CATGCGCCAGGCCAAGGGCAGCCAGGGCTGCACCTTCCATGTATTCAATGAGCGCATCAACCGCAACGCACGCAGCCTGGCCGACCTGGAAAGCGAGTTG CGCCGTGCGCTGCGCCGCGATGAGTTGGAGCTGCATTACCAGCCACGATTGAACCTGGAAGACGGTCGTATCGTTGGCCTGGAGGCCCTGGTCCGTTGGC GCCATGCCGAACGTGGCCTGCTGCCGCCCAGTGAGTTCGTGCCGCTGGCCGAGCAGAGCGGGCTGATCGTGCCGTTGGGATACTGGGTGATTTCCCGCGC CCTGCGTGACATGCAAGCCTTGCGTGAAGAGGGCCTGGCCCCCTTGCACATGGCGGTGAACCTGAGCTTCCGTCAGTTCCAGGACAGCCAGTTGCTGGCT ACCCTGAGCCGCTTGATCATCGAGCACGGTGTCGATGCCCGCTGGCTGGAGTTCGAGCTTACCGAGACCGCCGTCATGCGTCGCAACGAACTGGTCCGCC AGACCATGGATGCCCTGGCGCGCCTTGGCGTGCGGTTTTCGCTGGATGACTTCGGTACCGGCTTCTCTTCGTTCGTCCACCTCAATAGCTTGCCGATCAC GTTACTCAAGGTCGACCGAAGCTTCGTCGCTGAAATGGAGATGCGCGAAGAGAACCGCAAGTTGGTGCACGCCATGATCAACCTGGCGCACAACCTCAAC CTCGAAGTGGTCGCCGAGGGGGTGGAGAGCGAAGAGCAGATGCAGTTGCTGCGCGAGTTCGGTTGCGACCAGGTACAGGGGTTCCTGGTCAGCAAGCCGT TGCCGGTCGAGGCGTTGATCGATTACCTGTTGCAGGTTCCGGGGCGGCGGTCGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GACGCACCGCCGGTCCCGCAGGGCTCATCGCGGTCCATGCACGAGCTGCCCAGCCAGCGTAGGTGCCCTGGACTTCAGCAACCGCTTCATCCGCCACTCG AAGCCGATCGTCAGTGCCACCGAAGCGCACGCCAGCCCCAAGGCCAGCCCCCACCACACGCCGACCGCACCGCCGCCCAGGGTGAAGGTGAGCAGCCACG CTGCCGGTGCGCCTACCAGCCAGTAGCAGCACAGCCCGATCAGGAAGGTGGTCTTGGCATCCTTCAGCCCACGTATCGAGCCCATGGCGATGGTCTGCAC GCCATCGAACAGCTCGAACCAGGCCGCGACCATCAGCAGGCTTACCGCCAGCTGGTAGATCGCCGCGAAGGCTGGGTCATCGCCGTCGATGAACAGGCCT ACCAGCATCTCCGGACGCAGCCAGAACAGCGCGGCAAAGGCGAACATGATCATCGCGCCGAAGCCGATTCCCACACGCCCAGCGCTGCGTGCCGCCAACA
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| Amino Acid Sequence |
>GGDEF domain-containing protein
MSTPVEPLRLLLLADEPEWAALLRDCLLPLGGSAVLLTAPSWEAVDTLFNQDRQAVVLATPALQPAPGRCELPTILLLEHEPDSPPTAVSDWLVRDQLSA DAIRRSLRHVRERGVLVATLQRLAEQDPLTGIANRQGFQALLTARLAENDGRGLALGHLDLDNFRHVNDALGHQSGDRLILQVVARLKQQLEAGDQLARL GSDEFALLIDTRRDANRAEWMAERIVEALAEPFWIDGESLLLGCSLGLAHARAQAGPDPLMWHAHIAMRQAKGSQGCTFHVFNERINRNARSLADLESEL RRALRRDELELHYQPRLNLEDGRIVGLEALVRWRHAERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQALREEGLAPLHMAVNLSFRQFQDSQLLA TLSRLIIEHGVDARWLEFELTETAVMRRNELVRQTMDALARLGVRFSLDDFGTGFSSFVHLNSLPITLLKVDRSFVAEMEMREENRKLVHAMINLAHNLN LEVVAEGVESEEQMQLLREFGCDQVQGFLVSKPLPVEALIDYLLQVPGRRSA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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