Pseudomonas taiwanensis DSM 21245, H620_RS0102390
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taiwanensis DSM 21245 H620DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTTGCTCGTGGCGGTCGGTCAGGCGGCTGACGATGTCCAGCAAAGGGGTGGCATCGTGGATGACGTCGACCGAGCCATAGGCATGAACCGCCAGGTAGT TCCACGTTGGCACGACCTTGGGGTTGTCGGCTTTGCTGGGGTAGTAGCTGGGGCTGACATAAGCGTCCGCTCCTGGGAATACCAGCATTGCCTCGCTGCC GTGCTGCAGGTCCTGCCATTGGCGATTGGCTCGGGCAAGGTGAGCATAGACGGTGCCGAACTCGCCTTCGCTTGGCTCGACAAGCACGGGTAGGTGGCTG GCCAGCAGGCCGTGCTCGCCATGGCTGACCAGCACGGCAAGGCGTGTATCGAGCATGTGCTGGTGCAGGCGCTGGAGATCATGTTCCTGATGAGGCTTGC TGTTGTACATGGCGAGGTTCCTTGTCGAATCACTCCATCCTAGGCAGGCTATTGGCACCGAGTAAGAGCCATTAACGGCTGATTTCATAGGTCCAATTCC
|
|
| DNA Sequence for Gene |
>H620_RS0102390
ATGAGCGAGCGTCCTCTCGTATTGCCATTCGACCCTGCCGGCATCGTCCTCGACCGCCGCCGAGGCCTCAGTCAACAGCTGTATCAGGCACTGCGGGCAC GGGTGCTCGATGGCCGGCTCAGCAGTGGTACACGTTTGCCAGCAACCCGCGACCTGGCCGCCATACTGGCGTTGTCCCGCAACAGCGTGATCCGCGCGTA TGACCAGTTGTATGCCGAGGGCTACATCGAAAGCCGGGTTGGCGATGGCACCTATGTCAGTCGGCTGCCAAAACTATCCACACAACTATCCACAGGGTTA TCCCGGGGTTTATCAACAGAGTTATCCACATTTTCATCGAAAAACACTGAGGATATATCCAGCCGAGAGCGTTCCAGCGAGCCGCTTGAGCGTCTGAAAA ATAACCATTTACCACCACCAAAAAGTGGCGCGCCACGGGCATTTCGGGTGGGCATTCCCGCGTTCGACCTTTTCCCGTTCGAGGTCTGGGCCAAGCTGCA AGCGGGTTTCTGGAGAAATCCGGATCCCGCGCGACTCGGCTATGGGGACCCCGCAGGCGAGCGAGCTTTGCGAGAGCTGGTAGCGGCCTATATGCGTCGT TCCCGAGGACTTTCGTGCACGGCTGAGCAAATTGTGATCACCCATGGCGCGCAGCAGGCCATCAGCCTTTGTGCACAGTTGCTGCTGCAGCCCGGCGACA AGGTGGCTGTGGAAAACCCAGGCTACCGGGCAGCAGGTCACGCCTTCGCCATTGCAGGGGCCAGGGTGATTGGGGTAGCGGTGGACGAGCAGGGCATGGA CTGCCAACGACTGGCGCAGGTGACGGACTGCCGGTTGGCCTATGTGACGCCCGCTCATCAGTACCCCACGGGGGTAACCATGAGCCTGGCGAGACGCCTG GCGTTGCTGGACTGGGCCGAACGCAACGAGGGCTGGATCGTCGAAGACGACTATGACGGCGAGTATCGCTACAGCGGCGCGCCATTGGCACCCTTGGCCG CCCTCGATCAGCAGGGGCGCGTGTTGTACGTGGGTACCTTCGGCAAGATTGCCTTCCCGGCCTTGCGCCTGGGGTATCTGGTATTGCCTGCGCGCCTGGC GGAGGCCTTCAGCCAGGGCCGCGCGCTGGCGGTGCGGCATTCGGAAGTGGGCTCGCAGTGCGTAATGGCCGAGTTCATGGCCCAGGGGCACTTTCAGCGG CATATCCGGCGCATGCGCCGGGCAGCGTTGAGCCGCCGCAACGTGCTCAAGGCGGGATGGCCGGTGGATGTTCCCGGGCTAGGCGAAATGCCGGAAGTCG AGGCTGGGCTTCATGTGAAGGTAGATGTGGATAACCATGCCCGGGAGCAGGAACTGGTAGCCAAGGCTGAGGCGGTGGGGGTCGAGGTCAATCCGCTGAG CAGTTATTGGCTTGAGGACAGCGAGGTGCCTGTGGATAAACGCGCTGGGTTGGTTCTTGGGTTTGCGGCGGTGCCAGAAGGGGAGATCGCCGAGGCGTTG ATGCGCTTGCGCAAGGCATGGAAGCAACGGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGCTGATGGCCACTTCGCGGGCGTATCCGCTCCCACAGGCACGGGTGTTCAAGGATATCGCCCCCGAGGGTTGGATTTGGGTCCACTTCCTTGGGGGCAT ACCCTTACGGGGAGCGGCTTTGCCCGCGAAGTGAGCGACTCAGGTGCCTGACTTGATCCGTGTCCAAGCCCGCGTGCGTGCCCGCTCCGCATCCCGTGGC AACGGCTTGAGGGTATACAGCTTGGTCATCGCCTCCGCTGTCGGGTACAGGTTGGGGTTGTTGCGAATAGCCGGGCTCACTTTTTCGGTGGCATCCTTGT TCGGGTTTGGATACCCGACGAAGTCGCTAATCGGCGCAATCACCTCTGGGCGCAGCAGGTAATTGATGAACGTGTGGGCATCTTCCGGGTTAGCCGCATT CTTCGGAATCGCCAGCATGTCGAACCAGATCGGCGCGCCTTCCTTGGGCAGGCGCATATCGACCACCACACCATTCTTGGCATCGCGGGCGCGGTTGGCG
|
|
| Amino Acid Sequence |
>GntR family transcriptional regulator
MSERPLVLPFDPAGIVLDRRRGLSQQLYQALRARVLDGRLSSGTRLPATRDLAAILALSRNSVIRAYDQLYAEGYIESRVGDGTYVSRLPKLSTQLSTGL SRGLSTELSTFSSKNTEDISSRERSSEPLERLKNNHLPPPKSGAPRAFRVGIPAFDLFPFEVWAKLQAGFWRNPDPARLGYGDPAGERALRELVAAYMRR SRGLSCTAEQIVITHGAQQAISLCAQLLLQPGDKVAVENPGYRAAGHAFAIAGARVIGVAVDEQGMDCQRLAQVTDCRLAYVTPAHQYPTGVTMSLARRL ALLDWAERNEGWIVEDDYDGEYRYSGAPLAPLAALDQQGRVLYVGTFGKIAFPALRLGYLVLPARLAEAFSQGRALAVRHSEVGSQCVMAEFMAQGHFQR HIRRMRRAALSRRNVLKAGWPVDVPGLGEMPEVEAGLHVKVDVDNHAREQELVAKAEAVGVEVNPLSSYWLEDSEVPVDKRAGLVLGFAAVPEGEIAEAL MRLRKAWKQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|