Pseudomonas taiwanensis DSM 21245, H620_RS0102015
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taiwanensis DSM 21245 H620DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACTTCCAGCAGGTCGGTGGCATCGAGTGCTACCCGGTCACCGGTGAAATCACCTATGGCCTGGAGCGTCTGGCCATGTACATCCAGGGCGTAGACTCGG TGTACGACCTGGTCTGGGCCGACGGCCCGTTCGGCAAGGTGACCTACGGCGACGTGTTCCACCAGAACGAAGTGGAGCAGTCGACCTACAACTTCGAACA CGCCAACGTCGAGAAGCTGTTCGAGCTGTTCGATTTCTATGAAAGCGAAGCCAACCGCCTGATCAAGCTTGAGCTGCCGCTGCCGACTTATGAAATGGTC CTGAAGGCATCCCACACCTTCAACCTGCTGGACGCCCGCCGCGCCATCTCGGTGACCGAGCGCCAGCGTTACATCCTGCGCGTACGTACCCTGGCTCGGG ACGTAGCGCAAAGCTATCTGCAAGCCCGTGCACGCCTGGGCTTCCCGATGGCCACCCCTGAATTGCGTGACGAAGTGTTGCCGAAGCTGGAGGCTGCACA
|
|
| DNA Sequence for Gene |
>H620_RS0102015
ATGAGTGCTCAAGATTTCCTGGTAGAACTGGGCACCGAAGAGCTGCCACCGAAGGCCCTGGCCTCGCTGGGCGACGCCTTCCTGGCGGGCATCGAGAAAG GCCTGCAGGCTGCGGGCCTGAACTACACCGGCAAGCAGGTATACGCAGCGCCGCGCCGCCTGGCCGTGCTGATTCGTCAACTGGACGTGCAGCAGCCGGA CCGCAGCATCAACATCGACGGCCCGCCCATTCAGGCGGCGTTCAACGCTGAAGGCCAACCGACCCAGGCTGCTCTGGGCTTCGCCAAGAAGTGCGGAGTA GAGCTGTCGGAAATCGACCAGAGCGGCGCCAAGCTGCGTTTCTCCCAACACATTCCAGGCAAGGCCACTGCCAGCCTGCTGCCGACCATCGTCGAAGACT CGCTCAACGACCTGCCCATCCCCAAGCGCATGCGCTGGGCGGCCAGCCGTGAAGAGTTCGTCCGCCCGACCCAGTGGCTGGTAATGCTGCTGGGCGACCA GGTCGTCGAGTGCACCATCCTGTCGCAGAAAGCCGGCCGTGAATCCCGTGGTCACCGCTTCCATCACCCGGAAAACGTGGTCATCACTACCCCGGCCAAC TATGTCGAGGACCTGCGCAAGGCCTATGTACTGGCCGACTTCGCCGAGCGTCGCGAGCTGATCAGCAAGCGCACCGCCGAGCTGGCCATGCAGCAGGAAG GCAGCGCCATCGTACCGCCAGCGCTGCTGGATGAAGTCACCGCGCTGGTGGAGTGGCCGGTGCCGCTGGTCTGCTCGTTCGAAGAGCGCTTCCTCGAAGT GCCGCAGGAAGCCCTGATCACCACCATGCAGGACAACCAGAAGTACTTCTGCCTGCTGGACAGCGAAGGCAAGCTGCTGCCGCGCTTCATCACCGTCGCC AACGTCGAGAGCCGCGATCCGAAGCAGATCGTGCAAGGCAACGAGAAGGTCGTGCGCCCGCGCCTGACCGACGCCGAGTTCTTCTTCAAGCAGGACAAGA AGCAGCCGCTGGAAACCTTCAACGAGCGCCTGAAGAACGTGGTGTTCCAGGCTCAGTTGGGCACTGTCTTCGACAAGGCCGAGCGCGTTTCCAAACTGGC CGCATTCATCGCACCCAAGATTGGCGGCGATGCCGCGCGTGCCGGTCGCGCCGGCCTGCTGTCCAAGTGCGACCTGGCCACCGAGATGGTGGGCGAGTTC CCTGAAATGCAGGGTGTCGCCGGTTACTACTACGCGCTGAACGATGGCGAGCCGGAAGACGTCGCCCTGGCCCTGAACGAGCAGTACATGCCTCGTGGCG CCGGCGCCGAACTGCCGCAGACCCTGACCGGTGCAGCCGTGGCCATCGCCGACAAGCTCGACACCCTGGTCGGCATCTTCGGCATCGGCATGCTGCCAAC CGGCAGCAAGGACCCGTATGCCCTGCGCCGTGCCGCCCTGGGCGTGCTGCGCATCCTGATCGAGAAGCAGCTGGACCTGGACCTGAATGCCGCCGTCGAA TTCGCGGTCAAGCAGTTCGGTGCCAAGGTGAAAGCCGCCGGCCTGGCCGAACAGGTGCTGGAGTTCGTCTTCGACCGTCTGCGTGCGCGTTACGAAGACG AAGGCATCGACGTCTCGACCTACCTGTCGGTGCGTGCCCTGAAGCCGGGTTCGGCCCTGGACTTCGACCAGCGCGTACAGGCCGTGCAGGCCTTCCGCAA GCTGCCGGAAGCCAACGCCCTGGCTGCGGCGAACAAGCGAGTATCGAACCTGCTGAGCAAGGCCGAAGGTGCTATCGCCGACCACGTCGAACCGAAGTAC TTCGACAATGCCAACGAGTTCTCCCTGTACTCGGCCATCCAGCAGGCCGACCAGGCCGTGCAGCCGATGGCTGCTGCGCGTCAGTACAGCGAAGCACTGG CCCGCCTGGCTGCCCTGCGTGACCCGGTCGACGCCTTCTTCGAGGCCGTGATGGTCAACGCCGAAGACGCCAAGGTCCGTGCCAACCGTTATGCCCTGCT CAGCCGCCTGCGTGGCCTGTTCCTGGGCGTTGCCGATATTTCGCTGCTGGGGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCTTGAAACTGCTGATTCTCGATCGTGACGGGGTGATCAATTACGACTCCGACGCCTATATCAAGTCGCTGGAGGAGTGGATTCCGATTCCCGGCTCGG TCGAGGCTATCGCGCAGTTGAGCAAAGCCGGCTGGACGGTGGCCGTAGCCACCAACCAGTCCGGCATTGCCCGCGGCTACTACCCGCTGGAAACCCTTGA AGCCATGCATGCCCGCCTGCGCGCGCTGGTGGCCGAACTGGGTGGCGAAGTGGGTCATATCGTGTATTGCCCGCACGGGCCGGACGAAGGCTGCGATTGC CGCAAGCCCAAGCCTGGCATGCTGCGGGCGATCGCCGAGCACTACCAGGCCGACCTGCGCGGCGTCTGGTTCATCGGCGACAGCAAAGGTGACCTGGAGG CCGCCCTGGCCGTCGGTGCACAACCCGTGTTGGTGAAAACCGGCAAGGGCGTGCGGACCCTGGAAAAGGGTGTGCCGGAAACTACACTGATTTTCGACGA
|
|
| Amino Acid Sequence |
>glycyl-tRNA ligase subunit beta
MSAQDFLVELGTEELPPKALASLGDAFLAGIEKGLQAAGLNYTGKQVYAAPRRLAVLIRQLDVQQPDRSINIDGPPIQAAFNAEGQPTQAALGFAKKCGV ELSEIDQSGAKLRFSQHIPGKATASLLPTIVEDSLNDLPIPKRMRWAASREEFVRPTQWLVMLLGDQVVECTILSQKAGRESRGHRFHHPENVVITTPAN YVEDLRKAYVLADFAERRELISKRTAELAMQQEGSAIVPPALLDEVTALVEWPVPLVCSFEERFLEVPQEALITTMQDNQKYFCLLDSEGKLLPRFITVA NVESRDPKQIVQGNEKVVRPRLTDAEFFFKQDKKQPLETFNERLKNVVFQAQLGTVFDKAERVSKLAAFIAPKIGGDAARAGRAGLLSKCDLATEMVGEF PEMQGVAGYYYALNDGEPEDVALALNEQYMPRGAGAELPQTLTGAAVAIADKLDTLVGIFGIGMLPTGSKDPYALRRAALGVLRILIEKQLDLDLNAAVE FAVKQFGAKVKAAGLAEQVLEFVFDRLRARYEDEGIDVSTYLSVRALKPGSALDFDQRVQAVQAFRKLPEANALAAANKRVSNLLSKAEGAIADHVEPKY FDNANEFSLYSAIQQADQAVQPMAAARQYSEALARLAALRDPVDAFFEAVMVNAEDAKVRANRYALLSRLRGLFLGVADISLLG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|