Pseudomonas taiwanensis DSM 21245, H620_RS0123280
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taiwanensis DSM 21245 H620DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCAGGCCGCCGATCAGGCTGGCCTGCTCCTGCCAGCGCGCCAGCAGTACCAGATGTACCTGAACCGACAGGCCCACCCAGCCCAGCACCGACGCCAAGG TCAACCAGGGACGACACGGCATGTCAGGCCTGGCGCTGCAATTTCACGTACAACTGTTCGACCTTTTCTCGCGCCCAGGGCGTCTTGCGCAGGAAGGTCA GGCTCGACTTGATGCTCGGGTTGCTTTTGAAACAGCGCACATCCACGCGCTCGGCCAGCCCCTGCCATTGGTAGTGCGCCACCAGCTCGGTGAGGATCTG CTCCAAGGTCTTGCCGTGCAGCGCGTTGTGTTGGGCCGTGCTCATGCCAGTGCTCCAGCGTGGGAAAGATGCGCACCTTACACGAGTGTAGTGGCCAGAG CAGCCCGCACATAACGCTAGCCAGAACAGGCCACTGCATGATCAAATAGAAACGTTATATTATAACAGTAACGTTATCTGCCAAGGACCGTCACATCCCC
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| DNA Sequence for Gene |
>H620_RS0123280
ATGCTGTGCTCACCTTTACGCCTAACCCCCCTCGCCGCCACGCTCTGGCTGGTTTCAACCAGCAGCCATGCCGTTGAACTCGAACCCCAGGTCATCACCG CCAACCCACTGGGCAACCCACAGATGGCAGCCCCTAGCACCATCCTTGAAGGTGACGAACTGCTGCAACAGCAGCACGGCAGCCTCGGTGAAACGCTCAA CAAACAACCTGGGGTCGCCTCCACCTGGTTCGGCCCTGGTGCCAGCCGCCCAGTCATTCGCGGCCTCGATGGTGACCGCATCCGCATCCTGCGTAATGGC GTAGGCGCCCTGGATGCCTCGTCGCTGTCCTACGACCACGCCGTACCGCTGGATCCGGTGAACGTCGACCGCATCGAAATCGTCCGCGGCCCCGCTGCCT TGCTGTACGGCGGCAATGCCATCGGCGGCGTGGTCAACACCTTCGACAACCGCATCCCCGCTACCCCCATCGAAGGCATTCATGGCGCGGGTGAACTGCG CTACGGCGGCGCCGATACCACTCGCAGCAGCGCCGGCAAGCTCGAGGCCGGCGACGGGACCTTCGCCTTGCATCTGGATGCCAGCAGCCGACAGTTCAAC GACTTGCGCATACCCGGTTATGCACGTAGCTCCAAAGTCCGTGACAGCGACGACCCCGGCAGCCGCCACCGCCTGGAAAACAGCGATGGGCGCCAGGACG GCGGCGCCCTCGGAGGCGCCTACCATTGGGACCACGGTTACACCGGCATGTCCTACAGCCGTTACGACAGCAATTACGGTTCGGTGGCCGAGTCCGGCGT GCGCCTGGACATGAAACAGGATCACTACGGTTTCGAAACCGAAGTCCGTGATCTGGAAGGCCCCTTCAGCTCGATCAAGGTCGATGCCGGCTACACCGAC TACGAACACAGCGAGATTGAAGGAGGCGAGGTGCACACCACCTTCAAGAACAAAGGCTACGAAGCGCGGGTCGAGGCCCGCCACCAGCCTATCGGCCCGG TCGAAGGCGTGATCGGCGCGCAAGTCAACCGCAATGAATTCTCCGCACTGGGCGAGGAAGCCTTCGTCCCACATACCGATACTGACAGCCTGGCACTGTT CCTGCTCGAACAATGGCAGGCCAGCGAGCGTCTGAACCTGAGCCTCGGCGCACGCCTCGAGCACACACGAGTCGAGCCGGATGCCAAAGGCAACGACAAC TTCGCCAACGCCGACAGCGCCAGCACGTTCAATGCCTGGAGCCTATCGTCGGGTGCGGTGTACCAGCTCGACCCCTACTGGTCGCTGGCCGCGAACCTTG GCTACACCGAACGCGCTCCGACCTTCTACGAGCTGTACGCCAATGGCGCCCATGTGGCCACCGGCGCCTTCGAAGTCGGCGACGCCAATCTGAACAAGGA AAAAGCCATTTCCGCCGACCTGGCCTTGCGCTTCGACAATGGCACCCACAAGGGCAGCGTGGGGGTGTTCTACAGCCACTTCCGCAACTACATCGGCCTG ATCGGCACGGGCAATCTGCGTGAAGGCCATGATCACGACCATGGCGACGATGATCATGACCATGACCACGACGAAGGCTTGCCCGAGTACCAGTACCAAG GGGTACGAGCGCGGTTCTACGGCATCGAAGCCCAGGATCGTTGGCAACTGGCCGAGAACCGCTACGGCAATTTGGCCCTGGAATTGTCCGGCGACTACAC CCGAGCCAAGAACCTCGACAGTGGCGAACCCCTGCCCCGCATCGCACCACTGCGACTGAACAGCGGCCTGGTGTGGGAACTGGACCGCTGGCAAGCAAGG GTGGATGTACAACATGCGGCAGCGCAACATCGCAAGCCAGCCAATGAAACCCGCACCGATGGCTACACCACCTTGGGCGCGAGCGTCGGCTACCGGTTCG ATATCGGGCAGAGTCAGTGGCTGGCATTCGTCCGGGGCGAGAACCTGACGGACCAGACGGTGCGCTACGCCAGTTCGATCCTGCGCGATATCGCACCGGC CCCTGGGCGCAGCGTGGAAGTCGGATTACGCACTTCGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTCGCGGGGGCGCTTTGCGCCCCTATCGCCGGCAAGCCCGCTCCGGCAGGGCCGGACTGTTGCAAACTCGACAACAATCAACTGCGACAATTTGTCTTT TTTTCTTACAACTTCCTCTATATCCTCCACACCGCAAGCTGAATCGCTTCATCTGCCGAACCCTGTCTCCATCCTCATCGAAGGGCCCGCCCTTTGGTGC GCTTGCCGTTTTTTCAATAATCAAAAGATAGCGCTATCTCATGCTCCAACTGCCCAAAAACTGTTACATCGGCCTTGCCCTCACTGCACTCGCGAGCAAC GCCTGCGCCAACGACATGTTCGCCAGCGACTCTCCCTGGATGCTCGGTGACTGGGGGGGCACCCGCAGCGAACTGCTGGAAAAAGGCTACGACTTCACCC TCGGCTACACCGGCGAGATGGGCAGCAACCTGCACGGTGGTTACGACCACGACCGCACCGCACGCTACAGCGACCAGTTCACCTTCGCCAGCCATATGAA
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| Amino Acid Sequence |
>TonB-dependent receptor
MLCSPLRLTPLAATLWLVSTSSHAVELEPQVITANPLGNPQMAAPSTILEGDELLQQQHGSLGETLNKQPGVASTWFGPGASRPVIRGLDGDRIRILRNG VGALDASSLSYDHAVPLDPVNVDRIEIVRGPAALLYGGNAIGGVVNTFDNRIPATPIEGIHGAGELRYGGADTTRSSAGKLEAGDGTFALHLDASSRQFN DLRIPGYARSSKVRDSDDPGSRHRLENSDGRQDGGALGGAYHWDHGYTGMSYSRYDSNYGSVAESGVRLDMKQDHYGFETEVRDLEGPFSSIKVDAGYTD YEHSEIEGGEVHTTFKNKGYEARVEARHQPIGPVEGVIGAQVNRNEFSALGEEAFVPHTDTDSLALFLLEQWQASERLNLSLGARLEHTRVEPDAKGNDN FANADSASTFNAWSLSSGAVYQLDPYWSLAANLGYTERAPTFYELYANGAHVATGAFEVGDANLNKEKAISADLALRFDNGTHKGSVGVFYSHFRNYIGL IGTGNLREGHDHDHGDDDHDHDHDEGLPEYQYQGVRARFYGIEAQDRWQLAENRYGNLALELSGDYTRAKNLDSGEPLPRIAPLRLNSGLVWELDRWQAR VDVQHAAAQHRKPANETRTDGYTTLGASVGYRFDIGQSQWLAFVRGENLTDQTVRYASSILRDIAPAPGRSVEVGLRTSF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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