Pseudomonas taiwanensis DSM 21245, H620_RS0122860 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taiwanensis DSM 21245 H620DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGCGAGTGTTGAGCTAACCTGTTAATTGGATGTAACAACCACTGGCCAGTCTCTTGCATTCCTGGCATCGGGTATGGACTGCAATAGCGATCATGTAC AACCAACGCCATATCGAACGCCATCAGCTGCCTTGTGTGCTCAAGGTCTACAACCGCTTCACCGAGCAGCAGATCGGCTTTCTGGGTAATGCCTCGGAAG ATGGCTTGATGTTGATCAGCCAGCTGCCGGTGCTGGTCGGCCCGGATTTCGAGTTGCAGCTGCGCCTGCCACTGGCCGGTGGCGGCTTGCAGTTCATCAA CGTGACAGCCAGTTGCCTGTGGTGCCGTGAGGACCAGACCCCCGGCCACTACGATTCTGGTTTCATGCTCTTGCAAGCCCCCCGCGAGTACGACGATTTC GTCCGTTCATTGCGAGACTATTTCAGTTTTAACCCTGCCAACGCTTCCGCCTGAAGCTCGGTCCGCTAGAATCGGGACGACCTCGATACAGGACGACCCC
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| DNA Sequence for Gene |
>H620_RS0122860
|sbcB
GTGAGCTCCAGCATTTTCTGGCACGACTACGAAACCACCGGCATCAACCCACGCTGCGACCGACCGCTGCAGGTTGCCGGTGTGCGCACCGACCTCGATC TGAATGAGATCGAAGCGCCTATCAACCTCTATTGCCGCCCCTCCGACGACATCCTGCCGCACCCGGCCGCGTGCCTGGTAACCGGTATCACGCCCGAACA GTTGGCGACCCAGGGCCTATGCGAAGCTGAATTCATGACCCGGGTTCACGAGCAGCTTGCGCGCCCGGGAACCTGTGGCGCGGGCTACAACACCTTGCGT TTCGATGACGAGGTCACGCGTTACAGCCTGTATCGCAACTTCTTCGACCCCTATGCCCGTGAGTGGCAGGGCGGTAACAGTCGTTGGGACCTGATCGACG TCGTGCGCACGGCTTACGCGCTACGCCCTGAGGGCATCGTCTGGCCCCAGCAGGAGGGCCGTACCAGCTTGCGCCTGGAGTTGCTCAGCCAGGCCAATGG CATTGTCCATGGGCATGCCCATGAAGCACTTTCCGACGTGCGGGCGACCATTGGGTTGGCCCGTCTGATTCGCCAGAAACAACCTAAGTTGTATGACTGG TTGTTCAACCTTCGCAGTAAGCACAAAGTGCTGGAACAGATTCGCTTGTTGCAGCCGCTGGTGCACATATCAGGACGTTTCTCGGCCGCGCGTCATTATC TGGGCGTGGTGTTGCCACTGGCCTGGCACCCGCGCAATCGCAATGCACTGATTGTGTGCGACCTGCATCAGGAAACCCTACCGTTATTAAGGGAAAGTGC CGAAGTCCTGCGAGCGCGCTTGTACACTCGGCATGAACATTTATCTGAGGGGCAACTACCGGTACCGCTGAAGTTGGTGCAAATCAACCGCTGCCCGGTA GTGGCTCCGCTATCGGTATTGCGCCCTGCAGATCAACAACGCCTTGGGCTGGACATGGCATTGTTGCAATCGCGCGGTGAGGCCTTGGCCACGCAACAGT CGGTTTGGCAAGACAAGCTTGAACACATCTATGGCACGGAAGATTTCACCCCCAGCGAAGACCCTGAACAGCAGTTGTATGACGGTTTCCTGGGAGAGCG TGACCGTCGTCTATGTGAACAAGTGCGTACCCTGGAACCAGCGCAATTAGGGCATGGCCACTGGATGTTCGATGACCCACGAATGCCTGAGTTGCTGTTC CGGTATCGTGCGCGAAACTTCCCCGAGACCTTGAACCCCCAGGAGCGTCAGCGCTGGTTCGCGTTCTGCCAGCAGCGTTTGAGCGACCCTTTGCACGGCG CCCCGAACACGCTGGCGGGCTTCGAGCAGGCCCGGCAGGGGGCTTGGGCCGATGCCGATGAAGCGGGGCGCATGGTGCTGGACGCCTGGCAGGCCCATGC CGGGCAATTACAGGCACGGTTCGAATTGCACCCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGAGCCAACAAAAACGCCGGCATTAAGCCGGCGTTCGTGTTTGCAAAAGCGAGGAAACAGTGCGGACTATCAGTCCAGCAGAGTCGCCCAGCCTTCAAC CACATCACCACCCCACTTGGCTTTCCATTCTTTCAGGGTCTTGTGGTTACCGCCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTTTTGTATTGCTTG ACTTTGCGTGCACGCTTGGTGGTAGTGGTTTTAGCCACGGCGCGCGGGCCTTTGCTCAGTTTCGACTCTGGGTCGAGCAGGGCGATCACGTCGCGCAGCG ACTTGGAGTATTCACCCATCAGTGCGCGCAGTTTGCCTTCGAACTCCAGTTCTTGTTTCAGCTTGTCATCCTGCGACAGGTTGGCCAGGCGGGCCTGAAG TTCCTTGATGGCTTCTTCGGTAGCGCGGTACTCGTTGATCAGGGACATGGAGTGTTCCTTAGTGCGTGTTCAGAAATGTGTGTGCCAATAATAGACAGGC
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| Amino Acid Sequence |
>exonuclease I
MSSSIFWHDYETTGINPRCDRPLQVAGVRTDLDLNEIEAPINLYCRPSDDILPHPAACLVTGITPEQLATQGLCEAEFMTRVHEQLARPGTCGAGYNTLR FDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRTAYALRPEGIVWPQQEGRTSLRLELLSQANGIVHGHAHEALSDVRATIGLARLIRQKQPKLYDW LFNLRSKHKVLEQIRLLQPLVHISGRFSAARHYLGVVLPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRARLYTRHEHLSEGQLPVPLKLVQINRCPV VAPLSVLRPADQQRLGLDMALLQSRGEALATQQSVWQDKLEHIYGTEDFTPSEDPEQQLYDGFLGERDRRLCEQVRTLEPAQLGHGHWMFDDPRMPELLF RYRARNFPETLNPQERQRWFAFCQQRLSDPLHGAPNTLAGFEQARQGAWADADEAGRMVLDAWQAHAGQLQARFELHP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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