Pseudomonas taiwanensis DSM 21245, H620_RS0122325

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00661
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 322 431 2.5E-30
Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. IPR023554 ATP-dependent RNA helicase RhlB type 87 469 53.019821
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 80 471 2.9E-125
MobiDBLite mobidb-lite consensus disorder prediction - - 55 72 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 163 451 6.32E-72
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 112 287 2.3E-48
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 107 314 2.0E-52
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 59 302 4.9E-76
CDD cd00268 DEADc - - 99 300 1.03755E-96
MobiDBLite mobidb-lite consensus disorder prediction - - 1 80 -
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 305 475 4.0E-48
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 350 431 4.3E-31
CDD cd18787 SF2_C_DEAD - - 311 439 7.00733E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.