Pseudomonas taiwanensis DSM 21245, H620_RS0101100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taiwanensis DSM 21245 H620DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATCGAGCCGAAGACCGGCTTCATGCTCATCGACACATTGCTCAGCGACGAAGAAGGCGCCTTCAAGGATGCCGTGATGCACCTGATCCTGCCAGCCATC GTGCTGGGCACCATCCCGCTGGCGGTGATCGCCCGCATGACCCGCTCGTCGATGCTCGAAGTGCTGCGCGAGGACTACATCCGTACCGCCCGCGCCAAAG GCCTGTCACCGGCCCGCGTGGTCTTCGTGCACGGTCTGCGTAACGCGTTGATCCCTGTGCTGACGGTGTTCGGCCTGCAGGTCGGCACCTTGCTGGCCGG TGCGGTGCTCACCGAAACCATCTTCTCCTGGCCGGGCATCGGCAAGTGGCTGATCGAAGCCATCGGCGCCCGTGACTACCCCGTGGTCCAGAATGGCATC CTGTTGATTGCCTGCCTGGTGATTCTGGTCAACTTCGTCGTGGACATCCTCTACGGCCTGGCCAACCCACGCATCCGTCATCAGCGCTGAGGTCTTCGCC
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| DNA Sequence for Gene |
>H620_RS0101100
ATGACTAGCCCGATTCCAAAATCCGTCACGCCGGCCAGCCCGGTGGACCAAAGCCTGCTCTACCCGTCACCGTACAAAGAGTTCTGGCAGGCCTTTTCAC GCAACAAAGGTGCAGTGCTGGGCCTGGCCTTCATGTGCCTGGTGGTGTTTTGCGCTGTGTTCGCCCCATGGGTCGCGCCGCACGACCCCAGCGAGCAGTA CCGCGACTTCCTGCTGACCCCTCCGGTGTGGCTCGAAGGCGGTACCTGGCAGTTCATCCTCGGCACCGACGAACTGGGCCGCGACTTGCTCTCGCGGTTG ATCCAGGGCGCTCGGCTGTCGCTGCTGATCGGCCTGTCGTCGGTGGTGATGTCGCTGATCCCCGGTATCCTGCTCGGCCTGCTGGCCGGGTTCTTCCCGC AGATCCTCGGCCCTTCGATCATGCGCCTGATGGACGTGATGCTGGCCCTGCCCTCGCTGCTGCTGGCCGTGGCCATCGTCGCCATACTCGGCCCAGGCCT GATCAACACGGTGATCGCCATCGCCATCGTGTCACTGCCGTCCTACGTGCGCCTGACCCGCGCGGCGGTAATGGGCGAGTTGAACCGCGACTACGTCACC GCCGCGCGCCTGGCCGGTGCCGGCCTGCCACGCTTGATGTTCGTCACCGTGCTACCCAACTGCATGGCGCCGCTGATCGTGCAGGCGACCCTGAGTTTCT CCTCGGCGATTCTCGACGCCGCGGCCCTGGGCTTCCTCGGCTTGGGCGTGCAACCGCCCACCCCGGAATGGGGCACCATGCTGGCTTCGGCACGTGACTA CATCGAGCGCGCCTGGTGGGTGGTGAGCCTGCCCGGCCTGACCATTCTGCTCAGTGTGCTGGCAATCAACCTGATGGGCGACGGCCTGCGCGATGCGCTG GACCCGAAACTCAAGAACGCCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAGAACGCCATGTCACTGTTGCAGATCAACAACCTGAACGTGCGCTTCGGCGACACCAATGCAGTACCCGTGGTGGACGGCCTGGACCTGGCGGTAGAT GCCGGCGAGATCCTGGCCATCGTCGGCGAGTCCGGCTCGGGCAAGTCGGTGACCATGATGGCCCTGATGGGCCTGATCGACGCCCCCGGGCGTATCACTG CCGACGCCCTCACCTTCGACGGCACCGACATGCTCAAGCTCAGCGGCCGCCAGCGGCGCAAGGTGGTGGGCAAGGACATCGCCATGGTCTTCCAGGACCC GATGACCGCGCTCAACCCCAGCTACACCGTGGGCTACCAGATCGAGGAGGTGCTGCGCCAACACCTGGGCCTCAAGGGCAAGGCCGCTCGCCAGCGTGCC CTGGAATTGCTCAAGAAGGTCGAGATTCCGGCTGCCGAAAGCCGCCTGGACGCCTACCCGCACCAGTTGTCCGGCGGCATGAGCCAACGGGTGGCGATCG
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| Amino Acid Sequence |
>binding-protein-dependent transport system inner membrane protein
MTSPIPKSVTPASPVDQSLLYPSPYKEFWQAFSRNKGAVLGLAFMCLVVFCAVFAPWVAPHDPSEQYRDFLLTPPVWLEGGTWQFILGTDELGRDLLSRL IQGARLSLLIGLSSVVMSLIPGILLGLLAGFFPQILGPSIMRLMDVMLALPSLLLAVAIVAILGPGLINTVIAIAIVSLPSYVRLTRAAVMGELNRDYVT AARLAGAGLPRLMFVTVLPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDAL DPKLKNAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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