Pseudomonas taiwanensis DSM 21245, H620_RS0100920

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005886 plasma membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04409
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015920 lipopolysaccharide transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04409
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015221 lipopolysaccharide transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04409
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF06835 Lipopolysaccharide-assembly, LptC-related IPR010664 Lipopolysaccharide assembly, LptC-related 14 188 1.0E-54
Gene3D G3DSA:2.60.450.10 Lipopolysaccharide (LPS) transport protein A like domain - - 64 190 3.9E-35
PANTHER PTHR37481 LIPOPOLYSACCHARIDE EXPORT SYSTEM PROTEIN LPTC - - 3 189 2.9E-39
NCBIfam TIGR04409 JCVI: LPS export ABC transporter periplasmic protein LptC IPR026265 Lipopolysaccharide export system protein LptC 10 187 3.5E-51
Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. IPR026265 Lipopolysaccharide export system protein LptC 7 190 26.050327

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.