Pseudomonas sp. VLB120, PVLB_25350
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 531 | 785 | 5.8E-96 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 243 | 345 | 2.96927E-9 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 536 | 770 | 5.9E-76 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 221 | 345 | 1.59E-24 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 225 | 362 | 8.6E-29 |
| Pfam | PF13426 | PAS domain | IPR000014 | PAS domain | 245 | 346 | 5.8E-13 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 357 | 516 | 6.7E-29 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 536 | 770 | 5.17111E-117 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 220 | 784 | 0.0 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 531 | 785 | 3.5E-103 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 360 | 518 | 1.22543E-47 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 530 | 775 | 6.4E-122 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 348 | 520 | 4.2E-47 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 363 | 528 | 1.6E-44 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 535 | 782 | 3.14E-94 |
| Coils | Coil | Coil | - | - | 524 | 544 | - |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 364 | 522 | 1.41E-39 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 237 | 354 | 6.6E-17 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 359 | 514 | 8.8E-37 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 234 | 300 | 2.7E-8 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.